Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37096 * 119.99823 * 2 1 4 4 H 1.08002 * 119.99876 * 179.78424 * 3 2 1 5 5 C 1.38949 * 120.00158 * 359.77920 * 3 2 1 6 6 N 1.31407 * 119.99894 * 7.85315 * 5 3 2 7 7 Si 1.86796 * 120.00065 * 187.84350 * 5 3 2 8 8 H 1.48498 * 109.47209 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.47158 * 120.00360 * 7 5 3 10 10 H 1.48498 * 109.47540 * 240.00183 * 7 5 3 11 11 C 1.34776 * 120.00012 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99922 * 5.16665 * 11 2 1 13 13 C 1.50695 * 119.99977 * 185.16420 * 11 2 1 14 14 C 1.53004 * 109.47113 * 57.23312 * 13 11 2 15 15 C 1.53005 * 109.47473 * 297.23077 * 13 11 2 16 16 C 1.53002 * 109.47226 * 177.23354 * 13 11 2 17 17 C 1.53784 * 113.61540 * 181.41405 * 16 13 11 18 18 C 1.53784 * 87.07810 * 139.97832 * 17 16 13 19 19 C 1.53777 * 87.08380 * 334.56502 * 18 17 16 20 20 H 1.09001 * 109.47180 * 176.97622 * 1 2 3 21 21 H 1.09006 * 109.46822 * 296.97206 * 1 2 3 22 22 H 1.08993 * 109.47384 * 56.97355 * 1 2 3 23 23 H 0.96999 * 119.99935 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.46727 * 170.95393 * 14 13 11 25 25 H 1.09000 * 109.46931 * 290.95092 * 14 13 11 26 26 H 1.08997 * 109.47275 * 50.95386 * 14 13 11 27 27 H 1.08998 * 109.47227 * 288.69493 * 15 13 11 28 28 H 1.08996 * 109.46741 * 48.69170 * 15 13 11 29 29 H 1.08989 * 109.47249 * 168.69353 * 15 13 11 30 30 H 1.08994 * 112.90867 * 50.16285 * 16 13 11 31 31 H 1.09002 * 113.61248 * 25.43536 * 17 16 13 32 32 H 1.08992 * 113.69084 * 254.53651 * 17 16 13 33 33 H 1.09000 * 113.61416 * 89.12017 * 18 17 16 34 34 H 1.09006 * 113.61511 * 220.01445 * 18 17 16 35 35 H 1.09002 * 113.61026 * 139.97702 * 19 18 17 36 36 H 1.09000 * 113.61906 * 270.88196 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2305 1.1873 0.0035 5 6 1.4557 2.3906 -0.0046 6 7 0.1504 2.3962 0.1465 7 14 2.3773 4.0004 -0.2254 8 1 3.8286 3.7234 -0.3747 9 1 1.8786 4.6937 -1.4403 10 1 2.1573 4.8638 0.9626 11 6 2.1389 -1.1672 -0.0005 12 8 1.5361 -2.2154 -0.0956 13 6 3.6413 -1.1699 0.1169 14 6 4.0538 -0.4460 1.4002 15 6 4.2486 -0.4531 -1.0907 16 6 4.1469 -2.6133 0.1606 17 6 5.6727 -2.7272 0.3150 18 6 5.4090 -3.8996 1.2747 19 6 4.0366 -3.2628 1.5501 20 1 -0.3633 -1.0262 -0.0542 21 1 -0.3633 0.4661 0.9160 22 1 -0.3634 0.5601 -0.8615 23 1 -0.3346 3.2363 0.1436 24 1 5.1216 -0.5855 1.5688 25 1 3.8373 0.6178 1.3029 26 1 3.4964 -0.8546 2.2431 27 1 4.1270 -1.0721 -1.9796 28 1 3.7420 0.5003 -1.2399 29 1 5.3094 -0.2770 -0.9130 30 1 3.7422 -3.2290 -0.6426 31 1 6.1284 -1.8624 0.7972 32 1 6.1850 -3.0198 -0.6014 33 1 5.3494 -4.8670 0.7761 34 1 6.0678 -3.9098 2.1430 35 1 3.2269 -3.9882 1.6300 36 1 4.0451 -2.5445 2.3699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322800476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = 3.112688 kcal Electronic energy + Delta-G solvation = -16828.505375 eV Core-core repulsion = 14314.382623 eV Total energy + Delta-G solvation = -2514.122752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88133 -37.59504 -34.75074 -33.25835 -31.24086 -26.85020 -26.43389 -25.23875 -24.70663 -24.50792 -21.23844 -19.04631 -18.00204 -17.33617 -15.62971 -15.07199 -14.55883 -14.19406 -13.96458 -13.77406 -13.02681 -12.82038 -12.47912 -12.21841 -11.68223 -11.51609 -11.37376 -11.25233 -11.15125 -10.93775 -10.81889 -10.56148 -10.46835 -10.34891 -9.89452 -9.77580 -9.67633 -9.19317 -9.01335 -8.09890 -7.82495 -6.25671 -3.82510 3.08512 3.18500 3.20835 4.00504 4.06253 4.80656 5.05683 5.13164 5.14851 5.23288 5.45621 5.69405 5.80972 5.96580 6.00026 6.09727 6.20427 6.23942 6.32486 6.34561 6.50657 6.55444 6.61614 6.68473 6.77410 6.92882 6.98364 7.08683 7.15525 7.32892 7.48260 7.54974 7.80782 8.44400 9.10969 9.63397 10.02640 10.68069 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036425 B = 0.009562 C = 0.008249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.519517 B = 2927.602097 C = 3393.678599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.447 5.447 3 C -0.336 4.336 4 H 0.124 0.876 5 C 0.029 3.971 6 N -0.876 5.876 7 Si 0.919 3.081 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.461 3.539 12 O -0.614 6.614 13 C -0.052 4.052 14 C -0.150 4.150 15 C -0.156 4.156 16 C -0.075 4.075 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.135 4.135 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.264 0.736 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -3.269 1.025 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.164 5.164 3 C -0.463 4.463 4 H 0.141 0.859 5 C -0.174 4.174 6 N -0.515 5.515 7 Si 0.745 3.255 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.249 3.751 12 O -0.501 6.501 13 C -0.055 4.055 14 C -0.206 4.206 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.172 4.172 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.060 -3.589 0.987 8.878 hybrid contribution 0.260 1.010 -0.100 1.047 sum 8.320 -2.579 0.887 8.755 Atomic orbital electron populations 1.21499 0.80160 0.97225 1.03118 1.43682 1.06013 1.04799 1.61923 1.20339 0.93216 0.82709 1.50026 0.85911 1.25333 0.95718 0.99633 0.96746 1.70249 1.06490 1.26763 1.48035 0.85981 0.79554 0.81813 0.78103 1.19155 1.20593 1.20700 1.19876 0.88843 0.83493 0.82847 1.90484 1.70121 1.31780 1.57739 1.20272 0.93575 0.94968 0.96653 1.22186 0.99489 1.02831 0.96136 1.22150 0.99921 1.02778 0.96452 1.22259 0.93925 0.95207 0.98019 1.23032 0.97103 0.98382 0.99121 1.22805 0.98165 0.97832 0.99314 1.22982 0.96320 0.99802 0.98137 0.94935 0.91728 0.92229 0.92456 0.93315 0.89599 0.93015 0.93557 0.88852 0.93276 0.89349 0.90045 0.92270 0.90868 0.92233 0.91853 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.18 8.87 59.85 0.53 3.71 16 2 N -0.45 -11.49 3.02 -122.19 -0.37 -11.86 16 3 C -0.34 -8.29 6.89 -14.93 -0.10 -8.39 16 4 H 0.12 2.80 2.94 -52.49 -0.15 2.64 16 5 C 0.03 0.72 5.42 -17.47 -0.09 0.63 16 6 N -0.88 -22.84 9.49 55.50 0.53 -22.31 16 7 Si 0.92 19.19 29.56 -169.99 -5.02 14.17 16 8 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 C 0.46 11.36 6.43 -10.99 -0.07 11.29 16 12 O -0.61 -16.65 15.19 5.55 0.08 -16.57 16 13 C -0.05 -1.02 0.42 -155.66 -0.06 -1.09 16 14 C -0.15 -2.75 6.92 37.16 0.26 -2.49 16 15 C -0.16 -2.88 7.75 37.16 0.29 -2.59 16 16 C -0.08 -1.35 2.44 -89.80 -0.22 -1.57 16 17 C -0.14 -1.99 6.78 -25.92 -0.18 -2.17 16 18 C -0.14 -1.96 8.08 -25.92 -0.21 -2.17 16 19 C -0.14 -2.25 7.30 -25.92 -0.19 -2.44 16 20 H 0.03 0.83 6.91 -51.93 -0.36 0.47 16 21 H 0.06 1.71 7.03 -51.93 -0.36 1.35 16 22 H 0.06 1.57 7.08 -51.93 -0.37 1.20 16 23 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 24 H 0.05 0.75 6.09 -51.93 -0.32 0.44 16 25 H 0.09 1.69 5.00 -51.93 -0.26 1.43 16 26 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 27 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 28 H 0.09 1.89 4.76 -51.93 -0.25 1.64 16 29 H 0.05 0.77 7.84 -51.94 -0.41 0.36 16 30 H 0.09 1.73 7.86 -51.93 -0.41 1.32 16 31 H 0.08 1.12 6.21 -51.93 -0.32 0.80 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.37 5.70 -51.93 -0.30 1.07 16 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -28.03 268.93 -5.87 -33.91 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.09 Total: 5.90 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.05 Total: -7.28 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.16 Total: -34.18 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.08 Total: -16.57 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.03 -5.87 -33.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322800476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.021 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds