Wall clock time and date at job start Sun Mar 29 2020 21:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99716 * 2 1 4 4 H 1.48503 * 109.46967 * 239.99933 * 3 2 1 5 5 H 1.48495 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47059 * 119.99987 * 3 2 1 7 7 C 1.38816 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00076 * 197.29273 * 7 2 1 9 9 N 1.36938 * 119.99844 * 17.28459 * 7 2 1 10 10 C 1.47210 * 120.82565 * 27.50383 * 9 7 2 11 11 C 1.53194 * 108.87168 * 126.30974 * 10 9 7 12 12 C 1.53055 * 109.31666 * 54.68693 * 11 10 9 13 13 C 1.52941 * 109.54399 * 298.76504 * 12 11 10 14 14 C 1.53077 * 109.58081 * 181.30318 * 13 12 11 15 15 C 1.53113 * 109.16376 * 176.85342 * 14 13 12 16 16 O 1.42897 * 109.41212 * 302.52345 * 15 14 13 17 17 C 1.42899 * 114.11318 * 61.19741 * 16 15 14 18 18 C 1.53079 * 109.57443 * 301.11599 * 13 12 11 19 19 C 1.46945 * 120.63863 * 207.38574 * 9 7 2 20 20 H 0.96994 * 120.00568 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.53315 * 6.50057 * 10 9 7 22 22 H 1.08998 * 109.67510 * 246.20111 * 10 9 7 23 23 H 1.09008 * 109.49192 * 294.73420 * 11 10 9 24 24 H 1.08998 * 109.50091 * 174.64333 * 11 10 9 25 25 H 1.08999 * 109.45742 * 178.74521 * 12 11 10 26 26 H 1.08997 * 109.44278 * 58.77736 * 12 11 10 27 27 H 1.08994 * 109.52766 * 296.76030 * 14 13 12 28 28 H 1.08998 * 109.52354 * 56.94957 * 14 13 12 29 29 H 1.09007 * 109.47739 * 182.54642 * 15 14 13 30 30 H 1.09000 * 109.48414 * 62.50897 * 15 14 13 31 31 H 1.09004 * 109.48622 * 178.80800 * 17 16 15 32 32 H 1.08996 * 109.48599 * 58.76849 * 17 16 15 33 33 H 1.08994 * 109.52300 * 303.02905 * 18 13 12 34 34 H 1.09002 * 109.52081 * 63.15537 * 18 13 12 35 35 H 1.08995 * 109.59081 * 113.71265 * 19 9 7 36 36 H 1.08999 * 109.59190 * 353.41668 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0537 -1.2233 0.2775 9 7 1.3720 -2.3611 -0.3534 10 6 0.2215 -2.3393 -1.2715 11 6 0.4919 -3.3070 -2.4279 12 6 0.8165 -4.6922 -1.8635 13 6 2.0734 -4.6094 -0.9960 14 6 2.4175 -6.0004 -0.4574 15 6 3.7196 -5.9211 0.3441 16 8 4.7594 -5.4048 -0.4889 17 6 4.5130 -4.0858 -0.9805 18 6 3.2433 -4.0910 -1.8362 19 6 1.8236 -3.6556 0.1754 20 1 -0.4851 0.8399 0.0004 21 1 0.0867 -1.3309 -1.6629 22 1 -0.6784 -2.6481 -0.7396 23 1 1.3368 -2.9459 -3.0144 24 1 -0.3916 -3.3709 -3.0631 25 1 0.9875 -5.3880 -2.6850 26 1 -0.0197 -5.0426 -1.2587 27 1 1.6126 -6.3502 0.1889 28 1 2.5439 -6.6924 -1.2901 29 1 3.9934 -6.9172 0.6921 30 1 3.5794 -5.2623 1.2011 31 1 5.3584 -3.7597 -1.5864 32 1 4.3827 -3.4033 -0.1408 33 1 3.3882 -4.7409 -2.6991 34 1 3.0273 -3.0779 -2.1753 35 1 1.0562 -4.0716 0.8281 36 1 2.7470 -3.5185 0.7381 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334460944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:22 Heat of formation + Delta-G solvation = -55.164957 kcal Electronic energy + Delta-G solvation = -17020.175928 eV Core-core repulsion = 14503.526068 eV Total energy + Delta-G solvation = -2516.649860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21908 -38.27630 -35.47644 -33.16110 -32.33293 -31.90157 -28.29338 -27.27476 -24.70207 -24.40922 -23.48262 -21.61796 -19.32503 -18.48458 -17.14651 -16.90551 -16.71044 -15.96848 -15.51037 -15.37749 -15.11928 -15.02345 -14.23710 -14.02628 -13.43378 -13.41155 -12.96134 -12.89506 -12.72270 -12.36640 -12.27972 -12.17133 -11.95775 -11.78778 -11.53975 -11.30340 -11.04492 -10.80854 -10.51135 -10.17300 -8.65062 -7.86091 -5.30108 1.45588 1.47749 1.54156 2.50897 3.03560 3.27987 3.63249 3.83464 3.89282 4.01419 4.21940 4.35898 4.42075 4.44413 4.48719 4.60694 4.68838 4.79674 4.87848 4.93686 4.97838 5.00853 5.08094 5.12283 5.23164 5.31090 5.39822 5.44897 5.50901 5.58980 5.66733 5.79054 6.32941 6.39309 7.15610 7.87518 8.40492 9.19932 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032132 B = 0.010166 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.192048 B = 2753.613950 C = 3223.736793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.602 5.602 10 C 0.175 3.825 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.073 4.073 14 C -0.135 4.135 15 C 0.056 3.944 16 O -0.397 6.397 17 C 0.063 3.937 18 C -0.127 4.127 19 C 0.155 3.845 20 H 0.249 0.751 21 H 0.051 0.949 22 H -0.009 1.009 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.005 0.995 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -11.104 -3.302 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.325 5.325 10 C 0.049 3.951 11 C -0.173 4.173 12 C -0.129 4.129 13 C -0.075 4.075 14 C -0.173 4.173 15 C -0.020 4.020 16 O -0.316 6.316 17 C -0.013 4.013 18 C -0.164 4.164 19 C 0.029 3.971 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.009 0.991 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.023 0.977 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.164 -11.060 -3.322 12.650 hybrid contribution -0.323 1.501 0.316 1.567 sum 4.841 -9.558 -3.006 11.128 Atomic orbital electron populations 1.70177 1.06627 1.25752 1.55610 1.25725 0.95950 1.01299 1.01606 0.85424 0.77634 0.79597 0.78330 1.20390 1.22180 1.20243 1.19398 0.92721 0.86016 1.40371 0.91823 1.44257 1.35305 1.01797 1.51160 1.20642 0.87547 0.97724 0.89144 1.22063 1.00705 0.96377 0.98122 1.21388 0.96477 0.96336 0.98730 1.20930 0.95266 0.95026 0.96242 1.22146 0.98148 0.95912 1.01061 1.22726 0.87279 0.99909 0.92103 1.87827 1.44347 1.31631 1.67835 1.22569 0.98014 0.83644 0.97080 1.21996 0.94407 1.01724 0.98292 1.21105 0.96446 0.85994 0.93514 0.94225 0.93028 0.99073 0.92669 0.91695 0.90809 0.92840 0.90222 0.90100 0.86785 0.93993 0.88255 0.94473 0.91083 0.91920 0.97690 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.76 11.18 21.65 0.24 -55.52 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 3 Si 0.96 45.09 29.59 68.60 2.03 47.12 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.25 -13.95 9.59 84.03 0.81 -13.14 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.60 -30.03 2.41 -698.48 -1.68 -31.72 16 10 C 0.18 8.51 5.33 86.31 0.46 8.97 16 11 C -0.13 -5.00 5.74 30.68 0.18 -4.83 16 12 C -0.09 -2.92 4.72 30.59 0.14 -2.78 16 13 C -0.07 -2.38 0.52 -52.11 -0.03 -2.41 16 14 C -0.13 -3.49 4.92 30.66 0.15 -3.34 16 15 C 0.06 1.46 6.57 72.02 0.47 1.93 16 16 O -0.40 -12.00 10.76 -148.98 -1.60 -13.60 16 17 C 0.06 1.99 6.57 72.02 0.47 2.47 16 18 C -0.13 -4.11 4.37 30.66 0.13 -3.98 16 19 C 0.15 6.40 4.60 86.33 0.40 6.80 16 20 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 21 H 0.05 2.85 6.03 -2.39 -0.01 2.83 16 22 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 23 H 0.05 2.09 6.43 -2.38 -0.02 2.07 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.04 1.18 6.74 -2.39 -0.02 1.16 16 31 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 32 H 0.04 1.32 6.49 -2.39 -0.02 1.31 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.39 6.10 -2.39 -0.01 2.38 16 35 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 2.03 4.84 -2.39 -0.01 2.02 16 Total: -1.00 -61.96 267.36 3.63 -58.32 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.05 Total: 8.11 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 3.61 Total: -12.72 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -1.44 Total: -87.23 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -1.60 Total: -13.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -61.96 3.63 -58.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334460944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.156 kcal (2) G-P(sol) polarization free energy of solvation -61.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds