Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48496 * 109.46749 * 239.99798 * 3 2 1 5 5 H 1.48504 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47089 * 119.99899 * 3 2 1 7 7 C 1.37876 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00383 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.48558 * 111.00047 * 284.50237 * 10 9 7 12 12 C 1.54381 * 104.59479 * 200.95955 * 11 10 9 13 13 C 1.54261 * 105.05966 * 23.85150 * 12 11 10 14 14 C 1.48725 * 111.01742 * 168.99260 * 10 9 7 15 15 H 1.09003 * 110.38777 * 40.24444 * 14 10 9 16 16 C 1.52996 * 110.50773 * 277.75318 * 14 10 9 17 17 H 1.09006 * 110.33515 * 72.54253 * 16 14 10 18 18 C 1.54479 * 110.37144 * 310.29176 * 16 14 10 19 19 C 1.54508 * 104.05999 * 217.19149 * 18 16 14 20 20 C 1.54476 * 104.06660 * 359.97438 * 19 18 16 21 21 O 1.44429 * 110.37257 * 194.79058 * 16 14 10 22 22 H 0.96998 * 119.99683 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46620 * 60.00007 * 9 7 2 24 24 H 1.09000 * 109.46997 * 299.99967 * 9 7 2 25 25 H 1.08996 * 110.41470 * 82.18355 * 11 10 9 26 26 H 1.08995 * 110.41403 * 319.73726 * 11 10 9 27 27 H 1.09001 * 110.32653 * 264.95871 * 12 11 10 28 28 H 1.09003 * 110.32419 * 142.75135 * 12 11 10 29 29 H 1.09003 * 110.31985 * 118.89758 * 13 12 11 30 30 H 1.09004 * 110.32386 * 240.99946 * 13 12 11 31 31 H 1.08993 * 110.51210 * 335.83098 * 18 16 14 32 32 H 1.09004 * 110.51342 * 98.54686 * 18 16 14 33 33 H 1.09003 * 110.51470 * 118.64564 * 19 18 16 34 34 H 1.09013 * 110.51287 * 241.21472 * 19 18 16 35 35 H 1.09003 * 110.37223 * 142.80471 * 20 19 18 36 36 H 1.08991 * 110.37692 * 265.04002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.8157 -3.7946 -1.3422 12 6 3.3334 -5.2490 -1.3436 13 6 2.4788 -5.9797 -0.2874 14 6 1.5166 -4.9067 0.2656 15 1 0.5630 -4.9433 -0.2613 16 6 1.3053 -5.1028 1.7682 17 1 0.5251 -4.4338 2.1315 18 6 2.6244 -4.8564 2.5334 19 6 2.6032 -5.9072 3.6660 20 6 1.2735 -6.6636 3.4515 21 8 0.9620 -6.4766 2.0525 22 1 -0.4849 0.8401 -0.0004 23 1 0.6249 -2.5570 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 3.6417 -3.0971 -1.4806 26 1 2.0662 -3.6572 -2.1216 27 1 4.3864 -5.2764 -1.0633 28 1 3.1902 -5.7010 -2.3251 29 1 1.9161 -6.7903 -0.7506 30 1 3.1126 -6.3672 0.5103 31 1 3.4812 -5.0174 1.8792 32 1 2.6430 -3.8484 2.9478 33 1 3.4496 -6.5875 3.5718 34 1 2.6138 -5.4187 4.6405 35 1 1.3997 -7.7233 3.6738 36 1 0.4889 -6.2365 4.0758 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334919165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -48.573041 kcal Electronic energy + Delta-G solvation = -16347.064089 eV Core-core repulsion = 13830.700076 eV Total energy + Delta-G solvation = -2516.364013 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53950 -37.47205 -33.09122 -31.68959 -30.87861 -30.34115 -26.32945 -26.29449 -22.95438 -22.19298 -21.20305 -20.02860 -18.90183 -16.57045 -16.03216 -15.66625 -15.09817 -14.80677 -14.28012 -13.90235 -13.56783 -13.25260 -12.75164 -12.42179 -11.84376 -11.64838 -11.34827 -11.11443 -11.01747 -10.86787 -10.79004 -10.61309 -10.56939 -10.27512 -10.14763 -9.94636 -9.78896 -9.34385 -9.19127 -8.41642 -7.41285 -6.01992 -4.03372 3.33578 3.37549 3.40472 4.07116 4.44416 4.94204 5.04375 5.12844 5.21140 5.27877 5.31955 5.35429 5.58923 5.60803 5.65082 5.85246 5.90018 5.97804 6.05836 6.11173 6.26290 6.32913 6.39596 6.46175 6.51562 6.66259 6.66354 6.76653 7.11468 7.25764 7.31134 7.78334 7.99447 8.17533 8.50899 9.04292 9.60775 11.08892 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.007952 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.787760 B = 3520.234761 C = 3959.692621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.182 3.818 10 N -0.497 5.497 11 C 0.047 3.953 12 C -0.128 4.128 13 C -0.109 4.109 14 C 0.065 3.935 15 H 0.047 0.953 16 C 0.092 3.908 17 H 0.067 0.933 18 C -0.128 4.128 19 C -0.160 4.160 20 C 0.046 3.954 21 O -0.377 6.377 22 H 0.261 0.739 23 H -0.006 1.006 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -11.520 3.459 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.057 3.943 10 N -0.223 5.223 11 C -0.081 4.081 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.044 4.044 15 H 0.065 0.935 16 C 0.035 3.965 17 H 0.085 0.915 18 C -0.166 4.166 19 C -0.197 4.197 20 C -0.031 4.031 21 O -0.295 6.295 22 H 0.071 0.929 23 H 0.012 0.988 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.704 -11.416 3.723 12.896 hybrid contribution -0.294 1.043 -0.420 1.162 sum 4.411 -10.372 3.303 11.745 Atomic orbital electron populations 1.69954 1.06051 1.26852 1.51056 1.24996 0.94859 0.99292 0.95519 0.86561 0.79422 0.82788 0.78628 1.20301 1.21390 1.20202 1.21079 0.93474 0.89789 1.49940 0.91953 1.19900 0.90270 0.87959 0.96212 1.65347 1.30199 1.01411 1.25345 1.22903 0.99076 0.94977 0.91165 1.22380 0.99711 0.96236 0.98290 1.22196 0.97447 0.96950 0.98079 1.22479 0.96541 0.92147 0.93252 0.93525 1.22777 0.95981 0.82394 0.95385 0.91536 1.22731 0.98785 0.99099 0.96009 1.23002 0.98118 0.98710 0.99907 1.23330 0.95615 1.00329 0.83821 1.89084 1.86337 1.29098 1.25004 0.92894 0.98818 0.95344 0.90409 0.94587 0.91786 0.92339 0.92249 0.91254 0.89965 0.90216 0.91326 0.91091 0.89814 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -14.16 9.00 -34.44 -0.31 -14.47 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.18 4.76 4.55 -4.98 -0.02 4.73 16 10 N -0.50 -10.70 4.34 -223.45 -0.97 -11.67 16 11 C 0.05 0.91 6.15 -2.18 -0.01 0.90 16 12 C -0.13 -1.99 7.00 -25.35 -0.18 -2.17 16 13 C -0.11 -1.75 5.68 -25.35 -0.14 -1.89 16 14 C 0.06 1.23 2.40 -65.98 -0.16 1.07 16 15 H 0.05 0.95 8.00 -51.93 -0.42 0.54 16 16 C 0.09 1.65 3.14 -25.96 -0.08 1.57 16 17 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 18 C -0.13 -2.07 5.70 -25.16 -0.14 -2.21 16 19 C -0.16 -2.03 7.09 -25.17 -0.18 -2.21 16 20 C 0.05 0.60 7.63 37.93 0.29 0.89 16 21 O -0.38 -6.26 10.76 -35.23 -0.38 -6.64 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H -0.01 -0.17 7.74 -51.93 -0.40 -0.57 16 24 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 25 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.04 0.73 7.74 -51.93 -0.40 0.33 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.08 6.48 -51.93 -0.34 0.74 16 31 H 0.08 1.36 6.48 -51.93 -0.34 1.02 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -29.58 283.98 -8.42 -38.00 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.03 Total: -2.22 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.04 Total: -12.34 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.23 Total: -37.76 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.38 Total: -6.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.58 -8.42 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334919165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.576 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds