Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 H 1.08999 * 110.48758 * 80.76846 * 6 5 4 8 8 C 1.50705 * 110.48623 * 203.40339 * 6 5 4 9 9 O 1.21279 * 120.00152 * 114.77019 * 8 6 5 10 10 N 1.34781 * 119.99857 * 294.77907 * 8 6 5 11 11 C 1.46505 * 119.99528 * 179.97438 * 10 8 6 12 12 C 1.50707 * 109.46735 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46972 * 60.00109 * 16 14 12 18 18 H 1.48498 * 109.47203 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47092 * 300.00237 * 16 14 12 20 20 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 21 21 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 24 24 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 25 25 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 26 26 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 27 27 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 28 28 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 29 29 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 30 30 H 1.08997 * 110.76751 * 156.21852 * 5 4 2 31 31 H 0.96995 * 119.99855 * 359.97438 * 10 8 6 32 32 H 1.09002 * 109.46972 * 299.99454 * 11 10 8 33 33 H 1.08998 * 109.47090 * 60.00314 * 11 10 8 34 34 H 0.97004 * 119.99092 * 179.97438 * 15 14 12 35 35 H 1.08995 * 110.03307 * 238.56770 * 20 2 1 36 36 H 1.09006 * 110.02681 * 359.94951 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 1 2.2772 -2.8423 0.6585 8 6 4.0989 -2.1655 1.5721 9 8 4.2984 -1.4516 2.5320 10 7 4.9607 -3.1600 1.2811 11 6 6.1388 -3.3784 2.1243 12 6 6.9319 -4.5421 1.5875 13 1 6.5922 -5.0666 0.7067 14 6 8.0912 -4.9369 2.2209 15 7 8.5045 -4.2983 3.2937 16 14 9.0746 -6.3788 1.5551 17 1 9.5077 -6.0831 0.1657 18 1 10.2686 -6.6003 2.4098 19 1 8.2290 -7.5994 1.5608 20 6 2.0571 -0.7530 1.2341 21 1 -0.3633 0.5247 -0.8836 22 1 -0.3633 0.5030 0.8962 23 1 -0.3634 -1.0276 -0.0125 24 1 1.7056 1.9511 0.8961 25 1 3.1436 1.4272 -0.0126 26 1 1.6851 1.9585 -0.8837 27 1 1.3142 -1.4654 -1.5972 28 1 2.3297 -0.0528 -2.0255 29 1 4.1710 -0.8294 -0.6748 30 1 3.5325 -2.3686 -1.3411 31 1 4.8010 -3.7311 0.5135 32 1 6.7595 -2.4825 2.1203 33 1 5.8205 -3.5956 3.1439 34 1 9.3199 -4.5764 3.7395 35 1 2.6867 -0.0946 1.8324 36 1 1.2228 -1.1176 1.8334 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334923642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = -75.109012 kcal Electronic energy + Delta-G solvation = -15650.220306 eV Core-core repulsion = 13132.705606 eV Total energy + Delta-G solvation = -2517.514699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73529 -37.68471 -34.14318 -32.57095 -31.92312 -28.84154 -27.32942 -27.28721 -24.67921 -22.69114 -21.22242 -19.30029 -18.59733 -17.14969 -15.91974 -15.40586 -14.94549 -14.44853 -14.26421 -13.93592 -13.70346 -13.18919 -12.91774 -12.83505 -12.10086 -11.98690 -11.78859 -11.50787 -11.35581 -11.06505 -10.89463 -10.83187 -10.63672 -10.51232 -10.43182 -10.35439 -10.26065 -9.38768 -8.90088 -8.70956 -7.83341 -6.14861 -4.21765 3.26147 3.30868 3.32445 3.43897 4.12777 4.38246 4.57981 4.66741 4.82476 5.20988 5.25525 5.28108 5.37086 5.49507 5.54554 5.63215 5.71244 5.76671 5.80354 5.86633 5.94889 6.03845 6.12445 6.17487 6.25233 6.37135 6.45528 6.60364 7.34149 7.49497 7.54710 7.69576 7.99644 8.68207 8.81041 9.16553 9.45120 10.95385 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058151 B = 0.005189 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.389736 B = 5394.385121 C = 5612.641572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.115 4.115 7 H 0.092 0.908 8 C 0.503 3.497 9 O -0.558 6.558 10 N -0.712 5.712 11 C 0.249 3.751 12 C -0.543 4.543 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.103 4.103 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.390 0.610 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 6.053 -9.326 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.136 4.136 7 H 0.110 0.890 8 C 0.288 3.712 9 O -0.437 6.437 10 N -0.360 5.360 11 C 0.128 3.872 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.140 4.140 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.222 0.778 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.357 6.556 -8.469 17.120 hybrid contribution 0.567 -1.148 -0.612 1.419 sum -12.790 5.408 -9.080 16.592 Atomic orbital electron populations 1.21911 0.94684 1.01530 1.01352 1.21200 0.95105 0.95589 0.95294 1.21901 1.01318 0.95080 1.01195 1.22496 0.97048 0.98700 0.96820 1.22462 0.98159 1.00303 0.94083 1.22143 0.95735 1.00124 0.95616 0.88960 1.20397 0.84320 0.81017 0.85441 1.90626 1.75943 1.47237 1.29916 1.46455 1.26118 1.31975 1.31411 1.19089 0.81238 0.96585 0.90277 1.21200 1.08475 1.15328 1.13135 0.91990 1.24953 0.97204 0.97077 0.94772 1.69973 1.23290 1.40311 1.18782 0.86477 0.79343 0.82245 0.78853 1.20067 1.21066 1.20082 1.22200 0.98936 0.96247 0.96655 0.92989 0.92781 0.92666 0.92726 0.92373 0.93073 0.91492 0.91588 0.90970 0.91006 0.77781 0.95636 0.95645 0.92420 0.89551 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.16 37.16 0.30 -0.98 16 2 C -0.07 -0.80 0.94 -153.39 -0.14 -0.94 16 3 C -0.14 -1.49 8.14 37.16 0.30 -1.19 16 4 C -0.11 -1.18 5.91 -25.03 -0.15 -1.33 16 5 C -0.11 -1.42 6.31 -24.69 -0.16 -1.57 16 6 C -0.11 -1.70 3.25 -90.11 -0.29 -1.99 16 7 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 8 C 0.50 10.30 7.13 -10.98 -0.08 10.22 16 9 O -0.56 -13.73 15.42 5.56 0.09 -13.64 16 10 N -0.71 -15.33 5.54 -61.46 -0.34 -15.67 16 11 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 12 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.10 -1.43 5.49 -25.61 -0.14 -1.57 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.50 8.13 -51.93 -0.42 0.07 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 28 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 29 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.09 1.43 6.38 -51.93 -0.33 1.10 16 36 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 LS Contribution 294.02 15.07 4.43 4.43 Total: -1.00 -31.44 294.02 -6.97 -38.41 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.06 Total: 2.37 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.80 Total: -6.22 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.40 Total: -41.31 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.44 -6.97 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334923642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.703 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds