Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.02009 * 2 1 4 4 C 1.54266 * 110.03201 * 238.60544 * 2 1 3 5 5 C 1.54966 * 104.16247 * 217.13569 * 4 2 1 6 6 C 1.54893 * 102.77317 * 37.88972 * 5 4 2 7 7 H 1.08999 * 110.48758 * 80.76846 * 6 5 4 8 8 C 1.50705 * 110.48623 * 203.40339 * 6 5 4 9 9 O 1.21279 * 120.00152 * 114.77019 * 8 6 5 10 10 N 1.34781 * 119.99857 * 294.77907 * 8 6 5 11 11 C 1.46505 * 119.99528 * 179.97438 * 10 8 6 12 12 C 1.50707 * 109.46735 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99527 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46972 * 60.00109 * 16 14 12 18 18 H 1.48498 * 109.47203 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47092 * 300.00237 * 16 14 12 20 20 C 1.53877 * 110.03440 * 121.39014 * 2 1 3 21 21 H 1.09002 * 109.47153 * 59.29995 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.30186 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.30167 * 1 2 3 24 24 H 1.08997 * 109.47314 * 60.69909 * 3 2 1 25 25 H 1.08996 * 109.47276 * 180.70160 * 3 2 1 26 26 H 1.09007 * 109.46408 * 300.69875 * 3 2 1 27 27 H 1.09003 * 110.48923 * 335.78349 * 4 2 1 28 28 H 1.09000 * 110.48702 * 98.42889 * 4 2 1 29 29 H 1.09000 * 110.72119 * 279.57725 * 5 4 2 30 30 H 1.08997 * 110.76751 * 156.21852 * 5 4 2 31 31 H 0.96995 * 119.99855 * 359.97438 * 10 8 6 32 32 H 1.09002 * 109.46972 * 299.99454 * 11 10 8 33 33 H 1.08998 * 109.47090 * 60.00314 * 11 10 8 34 34 H 0.97004 * 119.99092 * 179.97438 * 15 14 12 35 35 H 1.08995 * 110.03307 * 238.56770 * 20 2 1 36 36 H 1.09006 * 110.02681 * 359.94951 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3137 -1.5011 -0.7184 6 6 2.8874 -1.9404 0.7044 7 1 2.2772 -2.8423 0.6585 8 6 4.0989 -2.1655 1.5721 9 8 4.2984 -1.4516 2.5320 10 7 4.9607 -3.1600 1.2811 11 6 6.1388 -3.3784 2.1243 12 6 6.9319 -4.5421 1.5875 13 1 6.5922 -5.0666 0.7067 14 6 8.0912 -4.9369 2.2209 15 7 8.5045 -4.2983 3.2937 16 14 9.0746 -6.3788 1.5551 17 1 9.5077 -6.0831 0.1657 18 1 10.2686 -6.6003 2.4098 19 1 8.2290 -7.5994 1.5608 20 6 2.0571 -0.7530 1.2341 21 1 -0.3633 0.5247 -0.8836 22 1 -0.3633 0.5030 0.8962 23 1 -0.3634 -1.0276 -0.0125 24 1 1.7056 1.9511 0.8961 25 1 3.1436 1.4272 -0.0126 26 1 1.6851 1.9585 -0.8837 27 1 1.3142 -1.4654 -1.5972 28 1 2.3297 -0.0528 -2.0255 29 1 4.1710 -0.8294 -0.6748 30 1 3.5325 -2.3686 -1.3411 31 1 4.8010 -3.7311 0.5135 32 1 6.7595 -2.4825 2.1203 33 1 5.8205 -3.5956 3.1439 34 1 9.3199 -4.5764 3.7395 35 1 2.6867 -0.0946 1.8324 36 1 1.2228 -1.1176 1.8334 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334923642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = -95.940930 kcal Electronic energy + Delta-G solvation = -15651.123645 eV Core-core repulsion = 13132.705606 eV Total energy + Delta-G solvation = -2518.418039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12810 -39.05140 -36.15442 -34.42528 -33.21711 -29.97808 -29.23200 -28.11310 -26.00852 -24.42116 -22.66507 -20.92404 -19.53779 -18.91009 -17.68300 -17.09622 -16.42714 -16.16030 -15.74414 -15.21992 -14.73192 -14.45422 -14.20630 -14.00566 -13.89348 -13.70037 -12.97763 -12.96522 -12.70196 -12.54305 -12.33318 -12.24697 -12.02602 -11.61728 -11.52094 -11.39471 -11.37136 -11.28073 -10.80153 -10.63807 -9.83737 -8.29941 -6.47179 1.42524 1.46970 1.55244 1.77008 2.32358 2.60863 3.04740 3.55974 3.61350 3.83680 4.19472 4.32741 4.35762 4.47991 4.55366 4.65474 4.69541 4.87104 4.95447 5.00995 5.07388 5.09298 5.16840 5.18787 5.21536 5.23519 5.37342 5.43691 5.47095 5.51978 5.62357 5.70514 5.83827 6.63714 6.91435 7.22410 7.49860 8.82275 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058151 B = 0.005189 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.389736 B = 5394.385121 C = 5612.641572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.105 4.105 7 H 0.121 0.879 8 C 0.498 3.502 9 O -0.606 6.606 10 N -0.706 5.706 11 C 0.265 3.735 12 C -0.557 4.557 13 H 0.084 0.916 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.105 4.105 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.408 0.592 32 H -0.016 1.016 33 H -0.015 1.015 34 H 0.269 0.731 35 H 0.050 0.950 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.147 4.747 -12.116 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.126 4.126 7 H 0.139 0.861 8 C 0.286 3.714 9 O -0.489 6.489 10 N -0.355 5.355 11 C 0.142 3.858 12 C -0.595 4.595 13 H 0.102 0.898 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.809 3.191 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.143 4.143 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.244 0.756 32 H 0.002 0.998 33 H 0.003 0.997 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.856 5.247 -11.302 19.390 hybrid contribution 1.005 -0.663 0.326 1.248 sum -13.851 4.584 -10.976 18.257 Atomic orbital electron populations 1.21879 0.92752 1.02354 1.02117 1.21197 0.96564 0.95097 0.94057 1.21912 1.00082 0.95508 1.02083 1.22493 0.96080 0.99028 0.96526 1.22502 0.98697 1.00977 0.92734 1.22212 0.93008 1.01787 0.95614 0.86062 1.21522 0.85271 0.79402 0.85213 1.90603 1.77267 1.48694 1.32326 1.46208 1.24924 1.32949 1.31399 1.18536 0.82627 0.95132 0.89479 1.21588 1.08744 1.15290 1.13845 0.89760 1.26098 0.98461 1.00295 0.94767 1.70145 1.23991 1.42444 1.20504 0.85181 0.77331 0.78130 0.78418 1.18565 1.21071 1.18580 1.22233 0.98442 0.95667 0.97936 0.91298 0.93000 0.91841 0.93103 0.94361 0.90912 0.89201 0.90221 0.93183 0.89001 0.75647 0.99767 0.99714 0.92236 0.93082 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.16 71.98 0.59 -1.47 16 2 C -0.07 -1.38 0.94 -51.46 -0.05 -1.43 16 3 C -0.14 -2.85 8.14 71.98 0.59 -2.26 16 4 C -0.10 -1.81 5.91 31.70 0.19 -1.62 16 5 C -0.11 -2.58 6.31 31.91 0.20 -2.38 16 6 C -0.11 -2.99 3.25 -10.46 -0.03 -3.02 16 7 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 8 C 0.50 20.92 7.13 87.66 0.62 21.54 16 9 O -0.61 -31.65 15.42 -3.02 -0.05 -31.70 16 10 N -0.71 -30.95 5.54 -466.76 -2.58 -33.53 16 11 C 0.27 15.02 5.43 85.63 0.46 15.49 16 12 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 13 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 16 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 18 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 C -0.10 -2.87 5.49 31.32 0.17 -2.69 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.09 1.22 7.84 -2.39 -0.02 1.20 16 28 H 0.08 1.23 7.84 -2.39 -0.02 1.21 16 29 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.41 14.73 8.32 -92.71 -0.77 13.96 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.05 1.77 6.38 -2.39 -0.02 1.75 16 36 H 0.07 1.80 7.67 -2.38 -0.02 1.78 16 Total: -1.00 -71.81 294.02 3.39 -68.41 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.27 Total: 16.83 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.44 Total: -7.78 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -2.30 Total: -90.38 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -71.81 3.39 -68.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334923642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.527 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds