Wall clock time and date at job start Sun Mar 29 2020 22:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47328 * 60.00126 * 4 3 2 6 6 C 1.52997 * 109.46975 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47376 * 184.99777 * 6 5 4 8 8 O 1.21299 * 119.99393 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00263 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99624 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.38955 * 119.99648 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00109 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47047 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47299 * 119.99749 * 14 12 10 17 17 H 1.48500 * 109.47062 * 240.00167 * 14 12 10 18 18 C 1.53002 * 109.46891 * 299.99597 * 5 4 3 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 5 4 20 20 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 28 28 H 1.08992 * 109.47554 * 59.99639 * 5 4 3 29 29 H 1.08994 * 109.47445 * 304.99750 * 6 5 4 30 30 H 1.09000 * 109.47459 * 65.00057 * 6 5 4 31 31 H 0.96996 * 119.99578 * 359.97438 * 9 7 6 32 32 H 0.96995 * 120.00047 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47097 * 180.02562 * 18 5 4 34 34 H 1.09001 * 109.47142 * 300.00176 * 18 5 4 35 35 H 1.09001 * 109.47375 * 59.99908 * 19 18 5 36 36 H 1.09000 * 109.47140 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7213 -1.2502 6 6 5.6094 0.7207 -1.2504 7 6 6.1114 0.1203 -2.5384 8 8 5.3228 -0.2683 -3.3741 9 7 7.4364 0.0153 -2.7616 10 6 7.8929 -0.5303 -3.9335 11 1 7.1908 -0.8764 -4.6776 12 6 9.2590 -0.6381 -4.1639 13 7 10.1132 -0.2166 -3.2587 14 14 9.8810 -1.3823 -5.7604 15 1 8.7257 -1.7766 -6.6060 16 1 10.7063 -0.3822 -6.4842 17 1 10.7056 -2.5802 -5.4599 18 6 3.5694 -0.7212 -1.2501 19 6 2.0395 -0.7212 -1.2496 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.9334 2.4700 -0.0002 27 1 3.9337 0.9284 0.8891 28 1 3.7158 1.2352 -2.1399 29 1 5.9732 1.7442 -1.1606 30 1 5.9727 0.1308 -0.4089 31 1 8.0669 0.3265 -2.0934 32 1 11.0668 -0.2922 -3.4194 33 1 3.9328 -1.2351 -2.1401 34 1 3.9331 -1.2352 -0.3603 35 1 1.6758 -0.2072 -2.1393 36 1 1.6761 -1.7488 -1.2500 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336373208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:21 Heat of formation + Delta-G solvation = -82.870917 kcal Electronic energy + Delta-G solvation = -15705.232992 eV Core-core repulsion = 13187.381712 eV Total energy + Delta-G solvation = -2517.851281 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13048 -37.60921 -34.08421 -33.12354 -31.19099 -30.44059 -28.69908 -25.44698 -23.79673 -22.39617 -20.61846 -19.48519 -18.91765 -17.75809 -15.81277 -15.03235 -14.55087 -14.39121 -14.06760 -13.96977 -13.85845 -13.32059 -13.03842 -12.34660 -12.09008 -11.87361 -11.63921 -11.44743 -11.26018 -11.10353 -10.92071 -10.76655 -10.47557 -10.31910 -10.20420 -10.08866 -9.83399 -9.67781 -9.40936 -8.22543 -7.91233 -6.38277 -3.78807 3.18250 3.28415 3.35782 3.98127 4.20659 4.80080 4.84977 4.97376 5.08492 5.26829 5.39487 5.48674 5.54963 5.65816 5.71961 5.79029 5.81954 5.85396 5.92817 6.03375 6.12872 6.17180 6.25282 6.27311 6.37465 6.40810 6.53345 6.61726 6.65277 6.92687 7.04002 7.58615 8.10864 8.66038 9.21955 9.60445 10.12221 10.79702 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.063798 B = 0.005263 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.782948 B = 5318.870814 C = 5608.485091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.116 4.116 5 C -0.063 4.063 6 C -0.129 4.129 7 C 0.442 3.558 8 O -0.592 6.592 9 N -0.566 5.566 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.119 4.119 19 C -0.110 4.110 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.270 0.730 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 2.237 7.976 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.149 4.149 4 C -0.154 4.154 5 C -0.082 4.082 6 C -0.169 4.169 7 C 0.228 3.772 8 O -0.478 6.478 9 N -0.202 5.202 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.755 3.245 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.156 4.156 19 C -0.148 4.148 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.225 0.775 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.349 1.972 7.405 14.534 hybrid contribution 0.922 -0.132 -0.302 0.979 sum -11.428 1.839 7.103 13.581 Atomic orbital electron populations 1.21838 0.95897 1.01330 1.01331 1.21168 0.94768 0.96362 0.98897 1.21558 0.95831 0.96191 1.01277 1.21631 0.95152 1.00152 0.98421 1.20789 0.93354 0.96604 0.97483 1.21574 0.96489 1.01346 0.97511 1.20015 0.83076 0.84931 0.89128 1.90467 1.55093 1.54340 1.47931 1.41956 1.05213 1.54351 1.18666 1.19770 0.91293 1.36107 0.95693 0.87931 1.25256 0.95777 0.97826 0.99154 1.69623 1.02759 1.47378 1.34668 0.85823 0.78809 0.78481 0.81369 1.19258 1.20783 1.20788 1.21696 0.94204 0.96706 1.02984 1.21566 0.96568 0.99491 0.97158 0.92847 0.92980 0.93151 0.91600 0.92612 0.92133 0.92311 0.92286 0.90801 0.90735 0.90739 0.77467 0.91985 0.89167 0.93291 0.92171 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 37.15 0.34 -1.11 16 2 C -0.09 -1.09 2.72 -90.62 -0.25 -1.33 16 3 C -0.11 -1.29 5.20 -26.73 -0.14 -1.43 16 4 C -0.12 -1.49 5.20 -26.73 -0.14 -1.63 16 5 C -0.06 -1.03 1.84 -90.62 -0.17 -1.20 16 6 C -0.13 -2.31 5.17 -27.88 -0.14 -2.45 16 7 C 0.44 10.52 7.50 -10.98 -0.08 10.44 16 8 O -0.59 -15.85 13.54 5.54 0.08 -15.77 16 9 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 10 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 14 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.12 -1.95 4.94 -26.73 -0.13 -2.08 16 19 C -0.11 -1.52 5.20 -26.73 -0.14 -1.66 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.33 7.95 -51.93 -0.41 0.92 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.09 1.82 5.95 -51.93 -0.31 1.51 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -29.80 288.03 -7.08 -36.89 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.05 Total: 7.80 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.09 Total: -10.58 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.67 Total: -38.94 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.08 Total: -15.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.80 -7.08 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336373208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.986 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds