Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47841 * 111.00065 * 290.84227 * 10 9 7 12 12 C 1.54902 * 104.79688 * 213.63862 * 11 10 9 13 13 C 1.55141 * 101.65382 * 37.06703 * 12 11 10 14 14 H 1.09004 * 110.84938 * 82.80329 * 13 12 11 15 15 C 1.52997 * 110.70295 * 205.96475 * 13 12 11 16 16 H 1.09001 * 110.80889 * 54.30354 * 15 13 12 17 17 C 1.54816 * 110.91115 * 290.67144 * 15 13 12 18 18 C 1.54093 * 104.18992 * 220.92388 * 17 15 13 19 19 O 1.43741 * 107.29426 * 357.97300 * 18 17 15 20 20 C 1.44412 * 107.00190 * 26.48470 * 19 18 17 21 21 C 1.47446 * 110.99663 * 169.99992 * 10 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08997 * 110.37420 * 332.46794 * 11 10 9 26 26 H 1.09004 * 110.37225 * 94.80616 * 11 10 9 27 27 H 1.09004 * 110.98984 * 278.97722 * 12 11 10 28 28 H 1.09000 * 111.02718 * 155.17897 * 12 11 10 29 29 H 1.09002 * 110.48828 * 339.60322 * 17 15 13 30 30 H 1.09004 * 110.48343 * 102.24699 * 17 15 13 31 31 H 1.09004 * 109.88089 * 117.39490 * 18 17 15 32 32 H 1.08998 * 109.88046 * 238.39207 * 18 17 15 33 33 H 1.09004 * 110.65590 * 201.47814 * 20 19 18 34 34 H 1.09001 * 110.60355 * 78.47619 * 20 19 18 35 35 H 1.09005 * 109.88436 * 242.65922 * 21 10 9 36 36 H 1.08996 * 109.89401 * 3.68822 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9232 -3.6994 -1.2904 12 6 3.1615 -5.2137 -1.5132 13 6 1.8500 -5.8232 -0.9514 14 1 1.0562 -5.7906 -1.6977 15 6 2.0819 -7.2579 -0.4732 16 1 2.9036 -7.2998 0.2418 17 6 2.3426 -8.2041 -1.6705 18 6 1.5568 -9.4824 -1.3199 19 8 0.9629 -9.2777 -0.0270 20 6 0.7874 -7.8537 0.1365 21 6 1.5185 -4.8982 0.2385 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.3100 -3.2896 -2.0930 26 1 3.8744 -3.1703 -1.2305 27 1 4.0266 -5.5601 -0.9478 28 1 3.2745 -5.4400 -2.5734 29 1 1.9642 -7.7647 -2.5935 30 1 3.4068 -8.4227 -1.7592 31 1 0.7777 -9.6540 -2.0626 32 1 2.2333 -10.3364 -1.2885 33 1 0.7059 -7.5950 1.1922 34 1 -0.0892 -7.5097 -0.4127 35 1 1.8778 -5.3441 1.1660 36 1 0.4422 -4.7370 0.2973 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336552546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -74.344610 kcal Electronic energy + Delta-G solvation = -15806.222572 eV Core-core repulsion = 13288.741019 eV Total energy + Delta-G solvation = -2517.481552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83474 -39.24176 -35.46050 -34.08060 -31.57449 -30.70367 -29.01763 -27.69182 -24.71227 -23.45135 -22.61469 -21.43338 -20.90246 -18.58855 -17.52907 -17.05768 -16.84373 -16.22111 -15.77563 -15.53537 -15.02520 -14.44422 -14.38344 -14.09405 -13.82728 -13.18630 -13.11622 -12.92881 -12.85208 -12.56318 -12.36147 -12.26750 -11.85040 -11.75492 -11.58986 -11.46625 -11.40164 -11.15984 -10.62751 -10.60719 -9.00416 -8.22197 -6.33192 1.39917 1.43566 1.51627 2.39506 3.00475 3.09969 3.39349 3.45313 3.72346 3.81157 4.00184 4.14058 4.22516 4.35535 4.41981 4.48379 4.59310 4.70165 4.75712 4.85991 4.89455 4.92860 4.99667 5.02788 5.05729 5.13708 5.17241 5.25252 5.30428 5.45361 5.64033 5.92758 6.03473 6.32241 6.59829 6.83195 7.37233 8.88802 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.065189 B = 0.005288 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.420373 B = 5293.570006 C = 5550.058793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.205 3.795 10 N -0.543 5.543 11 C 0.052 3.948 12 C -0.107 4.107 13 C -0.086 4.086 14 H 0.072 0.928 15 C -0.100 4.100 16 H 0.089 0.911 17 C -0.145 4.145 18 C 0.040 3.960 19 O -0.403 6.403 20 C 0.047 3.953 21 C 0.042 3.958 22 H 0.265 0.735 23 H -0.002 1.002 24 H -0.038 1.038 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 -16.034 -4.512 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.268 5.268 11 C -0.076 4.076 12 C -0.145 4.145 13 C -0.106 4.106 14 H 0.090 0.910 15 C -0.119 4.119 16 H 0.108 0.892 17 C -0.182 4.182 18 C -0.036 4.036 19 O -0.323 6.323 20 C -0.029 4.029 21 C -0.086 4.086 22 H 0.074 0.926 23 H 0.017 0.983 24 H -0.020 1.020 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.376 -15.983 -3.958 17.321 hybrid contribution -0.744 1.260 -0.609 1.585 sum 4.632 -14.723 -4.566 16.096 Atomic orbital electron populations 1.70083 1.07799 1.28037 1.51705 1.25952 0.95769 1.03319 0.94655 0.85407 0.78157 0.77714 0.79174 1.20689 1.19301 1.19122 1.21443 0.93594 0.91212 1.50255 0.92109 1.19547 0.90037 0.89466 0.93086 1.63556 1.27817 1.02949 1.32431 1.22873 0.98030 0.97229 0.89482 1.22732 0.97308 0.92507 1.01972 1.22266 0.98130 0.93580 0.96585 0.90985 1.22618 0.98341 0.92944 0.97967 0.89217 1.22984 1.02396 0.94506 0.98346 1.23333 0.96735 0.98809 0.84715 1.88831 1.82953 1.23998 1.36498 1.23683 0.97088 0.80132 1.02008 1.22933 0.96575 0.89890 0.99180 0.92626 0.98349 1.01988 0.96011 0.91632 0.89736 0.89033 0.89965 0.88853 0.91922 0.88542 0.88819 0.92267 0.90570 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.73 8.80 25.60 0.23 -30.51 16 8 H 0.06 3.48 7.76 -2.91 -0.02 3.45 16 9 C 0.21 11.34 4.33 85.55 0.37 11.71 16 10 N -0.54 -24.17 5.15 -890.11 -4.59 -28.76 16 11 C 0.05 1.98 6.14 86.77 0.53 2.51 16 12 C -0.11 -2.86 6.24 31.98 0.20 -2.66 16 13 C -0.09 -2.32 2.32 -9.62 -0.02 -2.34 16 14 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 15 C -0.10 -2.14 2.45 -9.49 -0.02 -2.17 16 16 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.14 -2.42 6.31 31.58 0.20 -2.22 16 18 C 0.04 0.72 7.70 72.35 0.56 1.27 16 19 O -0.40 -9.84 11.52 -148.98 -1.72 -11.55 16 20 C 0.05 1.09 6.74 72.66 0.49 1.58 16 21 C 0.04 1.50 6.02 86.64 0.52 2.02 16 22 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.00 -0.10 8.03 -2.38 -0.02 -0.11 16 24 H -0.04 -2.23 7.85 -2.39 -0.02 -2.25 16 25 H 0.02 0.91 7.62 -2.39 -0.02 0.89 16 26 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.08 2.05 8.05 -2.39 -0.02 2.04 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.30 7.85 -2.39 -0.02 1.28 16 30 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.37 8.05 -2.39 -0.02 1.35 16 35 H 0.08 2.52 7.82 -2.38 -0.02 2.50 16 36 H 0.03 1.24 7.55 -2.39 -0.02 1.22 16 Total: -1.00 -66.65 287.34 0.54 -66.11 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.02 Total: 4.69 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.51 Total: -20.28 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -4.30 Total: -85.81 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.72 Total: -11.55 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.65 0.54 -66.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.235 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds