Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00016 * 2 1 4 4 H 1.48502 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47347 * 300.00251 * 3 2 1 6 6 H 1.48497 * 109.47284 * 60.00066 * 3 2 1 7 7 C 1.37876 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00236 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47346 * 180.02562 * 9 7 2 11 11 C 1.47839 * 110.99577 * 69.15980 * 10 9 7 12 12 C 1.55123 * 104.90125 * 146.24160 * 11 10 9 13 13 C 1.55138 * 101.55921 * 323.15716 * 12 11 10 14 14 H 1.09000 * 110.70555 * 276.97105 * 13 12 11 15 15 C 1.53001 * 110.70407 * 153.90765 * 13 12 11 16 16 H 1.08993 * 110.75064 * 300.33506 * 15 13 12 17 17 C 1.55304 * 110.84593 * 63.80653 * 15 13 12 18 18 C 1.54944 * 100.97800 * 152.30096 * 17 15 13 19 19 O 1.43693 * 105.11450 * 323.61333 * 18 17 15 20 20 C 1.43240 * 109.99409 * 24.36003 * 19 18 17 21 21 C 1.47440 * 110.99774 * 190.00328 * 10 9 7 22 22 H 0.97006 * 119.99903 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46793 * 60.00701 * 9 7 2 24 24 H 1.08999 * 109.47152 * 300.00590 * 9 7 2 25 25 H 1.09006 * 110.37487 * 265.19155 * 11 10 9 26 26 H 1.08998 * 110.37941 * 27.42188 * 11 10 9 27 27 H 1.09001 * 111.14009 * 205.04662 * 12 11 10 28 28 H 1.08997 * 110.92274 * 81.17207 * 12 11 10 29 29 H 1.09002 * 111.12488 * 270.24072 * 17 15 13 30 30 H 1.08995 * 111.12730 * 34.36067 * 17 15 13 31 31 H 1.08996 * 110.31114 * 82.48962 * 18 17 15 32 32 H 1.09004 * 110.31323 * 204.65778 * 18 17 15 33 33 H 1.09001 * 109.83319 * 238.81565 * 20 19 18 34 34 H 1.08996 * 109.83048 * 117.84247 * 20 19 18 35 35 H 1.09000 * 109.88648 * 117.34007 * 21 10 9 36 36 H 1.08997 * 110.02557 * 356.22788 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9231 -3.6993 1.2894 12 6 3.1603 -5.2153 1.5165 13 6 1.8501 -5.8232 0.9503 14 1 1.0562 -5.7906 1.6964 15 6 2.0820 -7.2579 0.4720 16 1 2.8414 -7.2866 -0.3093 17 6 2.4748 -8.1794 1.6588 18 6 1.9556 -9.5490 1.1534 19 8 0.7413 -9.2512 0.4453 20 6 0.7624 -7.8948 -0.0145 21 6 1.5187 -4.8982 -0.2396 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 3.8743 -3.1702 1.2296 26 1 2.3107 -3.2878 2.0917 27 1 3.2694 -5.4416 2.5771 28 1 4.0269 -5.5623 0.9537 29 1 3.5553 -8.1972 1.8014 30 1 1.9651 -7.8796 2.5744 31 1 2.6828 -10.0047 0.4815 32 1 1.7511 -10.2103 1.9954 33 1 -0.0859 -7.3504 0.4004 34 1 0.7207 -7.8728 -1.1034 35 1 1.8780 -5.3440 -1.1671 36 1 0.4418 -4.7397 -0.2974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336552548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = -74.689670 kcal Electronic energy + Delta-G solvation = -15803.520725 eV Core-core repulsion = 13286.024210 eV Total energy + Delta-G solvation = -2517.496515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84780 -39.24390 -35.47315 -34.09606 -31.56518 -30.74357 -29.05710 -27.73154 -24.67823 -23.26289 -22.76100 -21.49067 -20.90032 -18.59967 -17.61202 -17.12440 -16.90523 -16.09281 -15.80281 -15.42782 -15.04046 -14.45701 -14.32541 -14.11391 -13.90838 -13.20333 -13.09931 -12.95896 -12.90707 -12.56672 -12.40453 -12.23345 -11.85830 -11.79879 -11.60212 -11.49534 -11.41266 -11.14200 -10.64574 -10.47088 -9.01583 -8.23028 -6.34013 1.39524 1.40397 1.54358 2.39005 2.97168 3.09335 3.36888 3.40740 3.63195 3.84138 3.96967 4.13285 4.29987 4.33809 4.41816 4.47722 4.56806 4.68874 4.76669 4.84364 4.90411 4.97217 4.98256 5.03028 5.05392 5.10385 5.15474 5.27816 5.29696 5.43542 5.63864 6.02522 6.06166 6.31352 6.58647 6.82975 7.36650 8.88494 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.066154 B = 0.005279 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.154582 B = 5302.891727 C = 5573.880163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.204 3.796 10 N -0.542 5.542 11 C 0.051 3.949 12 C -0.106 4.106 13 C -0.087 4.087 14 H 0.068 0.932 15 C -0.100 4.100 16 H 0.096 0.904 17 C -0.143 4.143 18 C 0.044 3.956 19 O -0.411 6.411 20 C 0.052 3.948 21 C 0.042 3.958 22 H 0.265 0.735 23 H -0.002 1.002 24 H -0.038 1.038 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -16.289 3.845 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.078 3.922 10 N -0.266 5.266 11 C -0.077 4.077 12 C -0.144 4.144 13 C -0.106 4.106 14 H 0.086 0.914 15 C -0.119 4.119 16 H 0.114 0.886 17 C -0.181 4.181 18 C -0.031 4.031 19 O -0.332 6.332 20 C -0.025 4.025 21 C -0.086 4.086 22 H 0.074 0.926 23 H 0.016 0.984 24 H -0.021 1.021 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.560 -16.215 3.397 17.819 hybrid contribution -0.736 1.287 0.463 1.553 sum 5.825 -14.929 3.860 16.483 Atomic orbital electron populations 1.70099 1.07834 1.27921 1.51859 1.25963 0.95770 1.03375 0.94675 0.85291 0.78947 0.78303 0.77815 1.18648 1.20293 1.20247 1.21500 0.93621 0.91157 1.50011 0.92039 1.19558 0.90062 0.89545 0.93057 1.63559 1.27751 1.02883 1.32421 1.22919 0.98048 0.97291 0.89420 1.22763 0.97267 0.92400 1.01959 1.22268 0.98194 0.93631 0.96535 0.91384 1.22634 0.97272 0.93215 0.98794 0.88595 1.23306 1.03471 0.93539 0.97775 1.23585 0.86025 0.97344 0.96174 1.88365 1.40815 1.29181 1.74795 1.23223 0.97918 0.82013 0.99315 1.22938 0.96504 0.89954 0.99178 0.92631 0.98353 1.02080 0.91527 0.96140 0.89016 0.89419 0.87738 0.90422 0.91052 0.88573 0.92136 0.91113 0.90423 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.52 -30.65 8.80 25.60 0.23 -30.43 16 8 H 0.06 3.53 7.76 -2.91 -0.02 3.51 16 9 C 0.20 11.33 4.33 85.56 0.37 11.70 16 10 N -0.54 -24.14 5.15 -889.66 -4.59 -28.72 16 11 C 0.05 1.95 6.14 86.85 0.53 2.48 16 12 C -0.11 -2.79 6.09 32.05 0.20 -2.60 16 13 C -0.09 -2.36 2.29 -9.61 -0.02 -2.38 16 14 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 15 C -0.10 -2.12 2.35 -9.53 -0.02 -2.14 16 16 H 0.10 1.92 8.11 -2.39 -0.02 1.90 16 17 C -0.14 -2.36 6.16 32.05 0.20 -2.16 16 18 C 0.04 0.76 7.78 72.65 0.57 1.33 16 19 O -0.41 -10.16 11.36 -148.98 -1.69 -11.85 16 20 C 0.05 1.22 7.12 72.45 0.52 1.74 16 21 C 0.04 1.51 6.17 86.65 0.53 2.05 16 22 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 23 H 0.00 -0.10 8.03 -2.39 -0.02 -0.12 16 24 H -0.04 -2.30 7.85 -2.39 -0.02 -2.32 16 25 H 0.07 2.56 8.14 -2.38 -0.02 2.55 16 26 H 0.02 0.86 7.62 -2.39 -0.02 0.84 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.09 2.05 8.05 -2.39 -0.02 2.03 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.54 7.78 -2.39 -0.02 1.52 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 2.56 7.80 -2.39 -0.02 2.54 16 36 H 0.03 1.17 7.56 -2.39 -0.02 1.15 16 Total: -1.00 -67.36 287.21 0.61 -66.75 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.02 Total: 4.10 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 3.56 Total: -19.94 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -4.30 Total: -85.98 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.69 Total: -11.85 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.36 0.61 -66.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.940 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds