Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48497 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47133 * 299.99946 * 3 2 1 6 6 H 1.48497 * 109.47199 * 60.00123 * 3 2 1 7 7 C 1.37874 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46891 * 109.46812 * 180.02562 * 10 9 7 12 12 C 1.47175 * 111.00265 * 73.15702 * 11 10 9 13 13 C 1.53072 * 109.26438 * 179.97438 * 12 11 10 14 14 O 1.42982 * 109.53553 * 301.29522 * 13 12 11 15 15 C 1.43174 * 113.68250 * 60.38316 * 14 13 12 16 16 C 1.46779 * 111.06832 * 196.41842 * 11 10 9 17 17 C 1.53379 * 113.54107 * 312.71983 * 16 11 10 18 18 C 1.53849 * 86.96531 * 139.91548 * 17 16 11 19 19 C 1.53360 * 113.59543 * 50.65725 * 16 11 10 20 20 H 0.97000 * 120.00536 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46795 * 60.00300 * 9 7 2 22 22 H 1.08997 * 109.46946 * 300.00239 * 9 7 2 23 23 H 1.09004 * 109.47024 * 60.00055 * 10 9 7 24 24 H 1.08998 * 109.46681 * 299.99837 * 10 9 7 25 25 H 1.09000 * 109.51139 * 60.04179 * 12 11 10 26 26 H 1.09001 * 109.51155 * 299.93488 * 12 11 10 27 27 H 1.09005 * 109.45984 * 61.31496 * 13 12 11 28 28 H 1.09001 * 109.45934 * 181.27731 * 13 12 11 29 29 H 1.09004 * 109.55187 * 63.47378 * 15 14 13 30 30 H 1.08994 * 109.55385 * 183.67047 * 15 14 13 31 31 H 1.08998 * 113.63592 * 254.43101 * 17 16 11 32 32 H 1.09003 * 113.63799 * 25.39532 * 17 16 11 33 33 H 1.09004 * 113.60763 * 220.30118 * 18 17 16 34 34 H 1.09004 * 113.60490 * 89.43321 * 18 17 16 35 35 H 1.09001 * 113.63266 * 334.65901 * 19 16 11 36 36 H 1.09005 * 113.63146 * 105.61816 * 19 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.9027 -5.1916 -1.3165 13 6 0.1499 -6.5236 -1.2729 14 8 1.0554 -7.5734 -0.9232 15 6 1.6714 -7.3989 0.3574 16 6 2.3846 -6.0482 0.3860 17 6 3.7325 -6.0525 -0.3460 18 6 4.3658 -6.4672 0.9933 19 6 3.1654 -5.7944 1.6813 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 1.6836 -5.2397 -2.0754 26 1 0.2075 -4.3880 -1.5597 27 1 -0.6452 -6.4672 -0.5293 28 1 -0.2828 -6.7284 -2.2521 29 1 0.9086 -7.4250 1.1357 30 1 2.3931 -8.1978 0.5270 31 1 3.8071 -6.8165 -1.1198 32 1 4.0457 -5.0670 -0.6909 33 1 5.3173 -5.9759 1.1970 34 1 4.4055 -7.5464 1.1417 35 1 3.3216 -4.7375 1.8974 36 1 2.7842 -6.3510 2.5375 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336553024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = -21.018643 kcal Electronic energy + Delta-G solvation = -16365.661656 eV Core-core repulsion = 13850.492491 eV Total energy + Delta-G solvation = -2515.169165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56454 -37.01552 -35.08131 -32.84154 -30.04244 -29.05799 -26.62280 -25.64013 -24.02137 -23.45879 -21.09301 -20.53371 -17.83001 -16.87038 -16.09399 -15.84249 -15.23523 -15.15333 -14.45697 -13.96485 -13.91788 -13.45638 -13.04951 -12.58388 -12.14026 -11.96102 -11.88105 -11.27378 -11.13216 -10.92605 -10.86547 -10.58630 -10.50874 -10.32255 -10.04312 -9.81676 -9.43825 -9.24658 -9.06722 -8.34273 -7.68008 -6.00787 -4.03304 3.30013 3.37528 3.41257 3.96792 4.23624 4.48176 4.79007 4.81145 4.86766 5.05391 5.24483 5.35094 5.39718 5.54294 5.58133 5.70656 5.72460 5.90091 5.90349 6.03501 6.06876 6.13481 6.22848 6.30254 6.37964 6.46611 6.57768 7.00888 7.26603 7.47192 7.54108 7.78011 7.89094 8.07151 8.42215 9.04219 9.60532 11.10570 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037176 B = 0.007101 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.001738 B = 3941.896051 C = 4441.325269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.059 3.941 11 N -0.519 5.519 12 C 0.021 3.979 13 C 0.063 3.937 14 O -0.388 6.388 15 C 0.092 3.908 16 C 0.052 3.948 17 C -0.168 4.168 18 C -0.140 4.140 19 C -0.130 4.130 20 H 0.260 0.740 21 H 0.015 0.985 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -13.571 0.283 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.067 4.067 11 N -0.243 5.243 12 C -0.107 4.107 13 C -0.014 4.014 14 O -0.306 6.306 15 C 0.015 3.985 16 C -0.039 4.039 17 C -0.207 4.207 18 C -0.178 4.178 19 C -0.167 4.167 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.729 -13.568 0.507 14.080 hybrid contribution 1.041 1.266 -0.465 1.704 sum 4.770 -12.301 0.041 13.194 Atomic orbital electron populations 1.69979 1.06010 1.26460 1.50716 1.24988 0.94825 0.99163 0.95314 0.86553 0.80080 0.83865 0.77601 1.19799 1.21020 1.20971 1.21223 0.92976 0.91057 1.50782 0.92811 1.19055 0.93940 0.89973 0.97714 1.22493 0.96987 0.87976 0.99274 1.62321 1.32896 1.02033 1.27023 1.22733 0.99163 0.98096 0.90709 1.22678 0.91602 0.86351 1.00770 1.87946 1.60530 1.46142 1.36008 1.22325 0.96017 0.94454 0.85697 1.22850 0.90806 0.93116 0.97123 1.23510 0.97806 1.02299 0.97090 1.22777 0.97981 1.00126 0.96908 1.23127 0.95177 1.02376 0.96068 0.93052 0.96679 0.95805 0.91432 0.95882 0.94540 0.88943 0.92380 0.88868 0.92380 0.88871 0.91644 0.89508 0.91455 0.90496 0.88464 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.80 5.04 -27.88 -0.14 0.66 16 10 C 0.06 1.24 3.76 -3.83 -0.01 1.23 16 11 N -0.52 -9.60 4.67 -218.49 -1.02 -10.62 16 12 C 0.02 0.36 5.35 -3.64 -0.02 0.34 16 13 C 0.06 0.92 6.94 37.19 0.26 1.18 16 14 O -0.39 -5.89 10.84 -35.23 -0.38 -6.27 16 15 C 0.09 1.27 6.04 37.04 0.22 1.50 16 16 C 0.05 0.80 1.01 -131.40 -0.13 0.67 16 17 C -0.17 -2.44 6.69 -26.09 -0.17 -2.61 16 18 C -0.14 -1.71 7.73 -25.85 -0.20 -1.91 16 19 C -0.13 -1.83 7.11 -26.10 -0.19 -2.01 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 21 H 0.01 0.41 6.82 -51.93 -0.35 0.06 16 22 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.40 5.36 -51.93 -0.28 1.12 16 24 H 0.02 0.49 6.82 -51.93 -0.35 0.14 16 25 H 0.04 0.63 7.88 -51.93 -0.41 0.23 16 26 H 0.09 1.71 6.77 -51.93 -0.35 1.36 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.08 7.34 -51.93 -0.38 0.70 16 31 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.09 1.40 6.10 -51.93 -0.32 1.08 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.80 7.63 -51.93 -0.40 0.41 16 35 H 0.10 1.54 5.66 -51.93 -0.29 1.24 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 277.23 15.07 4.18 4.18 Total: -1.00 -30.19 277.23 -7.94 -38.12 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.63 Total: -1.47 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -0.80 Total: -14.46 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.28 Total: -36.74 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.38 Total: -6.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.19 -7.94 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336553024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.103 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds