Wall clock time and date at job start Sun Mar 29 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 C 1.53000 * 109.46848 * 119.99523 * 2 1 3 5 5 C 1.52999 * 109.46949 * 65.00448 * 4 2 1 6 6 H 1.08999 * 115.55099 * 29.32857 * 5 4 2 7 7 C 1.53070 * 117.51414 * 243.60334 * 5 4 2 8 8 C 1.52999 * 59.98757 * 252.52356 * 7 5 4 9 9 H 1.09003 * 117.49794 * 107.49782 * 8 7 5 10 10 C 1.50702 * 117.49883 * 252.49809 * 8 7 5 11 11 O 1.21294 * 119.99638 * 68.75032 * 10 8 7 12 12 N 1.34772 * 120.00060 * 248.74436 * 10 8 7 13 13 C 1.46496 * 119.99973 * 359.97438 * 12 10 8 14 14 C 1.37098 * 119.99705 * 180.02562 * 12 10 8 15 15 H 1.07997 * 120.00343 * 338.85314 * 14 12 10 16 16 C 1.38952 * 119.99828 * 159.13736 * 14 12 10 17 17 N 1.31418 * 119.99855 * 344.36141 * 16 14 12 18 18 Si 1.86794 * 120.00275 * 164.37135 * 16 14 12 19 19 H 1.48505 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47603 * 119.99262 * 18 16 14 21 21 H 1.48502 * 109.47286 * 239.99865 * 18 16 14 22 22 H 1.08994 * 109.46877 * 60.00631 * 1 2 3 23 23 H 1.08998 * 109.46618 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47375 * 299.99879 * 1 2 3 25 25 H 1.08994 * 109.47375 * 240.00121 * 2 1 3 26 26 H 1.08999 * 109.47257 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47213 * 300.00062 * 3 2 1 28 28 H 1.09006 * 109.47193 * 59.99570 * 3 2 1 29 29 H 1.08996 * 109.47687 * 305.00073 * 4 2 1 30 30 H 1.09001 * 109.47154 * 184.99969 * 4 2 1 31 31 H 1.09000 * 117.51442 * 145.04657 * 7 5 4 32 32 H 1.08997 * 117.49372 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47396 * 271.59231 * 13 12 10 34 34 H 1.09002 * 109.46927 * 31.59648 * 13 12 10 35 35 H 1.09000 * 109.47317 * 151.59444 * 13 12 10 36 36 H 0.96998 * 119.99387 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 1.5393 -2.6153 0.1868 7 6 0.6789 -2.7115 2.2660 8 6 2.1539 -3.1169 2.2939 9 1 2.7835 -2.6728 3.0650 10 6 2.4929 -4.5357 1.9154 11 8 2.3524 -4.9077 0.7695 12 7 2.9522 -5.3911 2.8501 13 6 3.1224 -4.9416 4.2339 14 6 3.2610 -6.6817 2.5056 15 1 2.8364 -7.1190 1.6141 16 6 4.1158 -7.4290 3.3066 17 7 4.8642 -6.8306 4.2060 18 14 4.2012 -9.2840 3.1050 19 1 3.2659 -9.7090 2.0327 20 1 5.5854 -9.6792 2.7402 21 1 3.8198 -9.9389 4.3821 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6054 -0.2617 2.1370 30 1 3.1263 -0.6443 1.2953 31 1 -0.0463 -3.4710 1.9740 32 1 0.3379 -2.0004 3.0184 33 1 4.1190 -4.5179 4.3584 34 1 2.3739 -4.1835 4.4644 35 1 3.0011 -5.7889 4.9088 36 1 5.4611 -7.3523 4.7649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387657667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:40 Heat of formation + Delta-G solvation = -26.524220 kcal Electronic energy + Delta-G solvation = -15628.464489 eV Core-core repulsion = 13113.056584 eV Total energy + Delta-G solvation = -2515.407905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.00143 -37.09337 -34.93080 -34.19379 -31.51279 -27.51767 -27.10755 -26.31336 -24.80628 -22.55749 -20.84275 -19.84078 -18.38696 -16.84710 -16.16199 -15.05487 -14.89281 -14.42096 -13.94082 -13.77229 -13.68925 -13.13181 -12.76401 -12.29694 -12.01079 -11.83460 -11.45433 -11.31777 -11.26138 -11.18898 -10.99168 -10.82681 -10.71801 -10.52568 -10.30245 -10.26503 -9.68581 -9.39147 -8.97791 -8.32700 -7.63716 -6.29395 -3.81543 3.16247 3.27325 3.34742 3.68677 4.15741 4.45394 4.67715 4.96904 5.00863 5.09321 5.17189 5.38875 5.50745 5.57198 5.62958 5.75792 5.78360 5.84104 5.87711 6.00452 6.02290 6.13335 6.16891 6.29058 6.37961 6.41461 6.46133 6.53601 6.78333 6.91481 7.24469 7.60530 8.18496 8.54256 9.23936 9.49217 10.06935 10.75534 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058635 B = 0.005421 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.412730 B = 5164.275125 C = 5282.811138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.123 4.123 6 H 0.113 0.887 7 C -0.159 4.159 8 C -0.166 4.166 9 H 0.109 0.891 10 C 0.473 3.527 11 O -0.592 6.592 12 N -0.444 5.444 13 C 0.114 3.886 14 C -0.305 4.305 15 H 0.099 0.901 16 C 0.029 3.971 17 N -0.881 5.881 18 Si 0.924 3.076 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 12.039 -1.033 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.120 4.120 5 C -0.142 4.142 6 H 0.131 0.869 7 C -0.197 4.197 8 C -0.187 4.187 9 H 0.127 0.873 10 C 0.261 3.739 11 O -0.478 6.478 12 N -0.162 5.162 13 C -0.030 4.030 14 C -0.433 4.433 15 H 0.117 0.883 16 C -0.174 4.174 17 N -0.521 5.521 18 Si 0.751 3.249 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.642 11.763 -1.417 13.123 hybrid contribution 0.312 -0.927 0.292 1.020 sum -5.331 10.836 -1.125 12.129 Atomic orbital electron populations 1.21833 0.95304 1.02178 1.00934 1.21109 0.95969 0.95625 0.98655 1.21846 1.00930 0.96281 1.01354 1.21247 1.00629 0.92620 0.97499 1.22294 1.02580 0.93495 0.95806 0.86947 1.22990 0.92053 1.03014 1.01627 1.22312 0.97907 0.95835 1.02688 0.87277 1.19192 0.84221 0.85164 0.85283 1.90489 1.59403 1.78041 1.19842 1.43523 1.55832 1.10056 1.06810 1.21454 0.98703 0.98684 0.84134 1.19718 1.25905 0.86727 1.10971 0.88334 1.25309 0.94730 1.00553 0.96816 1.70045 1.23315 1.35691 1.23042 0.85895 0.78172 0.82605 0.78224 1.19235 1.20773 1.20666 0.93350 0.92056 0.93037 0.91076 0.92781 0.92984 0.92912 0.92016 0.91668 0.88951 0.89007 0.93051 0.95330 0.91012 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.01 37.16 0.33 -1.22 16 2 C -0.10 -1.09 2.88 -90.62 -0.26 -1.35 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.08 -1.08 4.96 -26.73 -0.13 -1.21 16 5 C -0.12 -2.04 4.24 -90.58 -0.38 -2.42 16 6 H 0.11 2.10 7.60 -51.93 -0.39 1.71 16 7 C -0.16 -2.56 9.88 -26.70 -0.26 -2.83 16 8 C -0.17 -3.22 4.52 -91.77 -0.41 -3.64 16 9 H 0.11 1.97 7.30 -51.93 -0.38 1.59 16 10 C 0.47 12.09 7.41 -10.99 -0.08 12.00 16 11 O -0.59 -17.11 15.94 5.55 0.09 -17.03 16 12 N -0.44 -11.88 3.02 -122.20 -0.37 -12.25 16 13 C 0.11 2.64 8.24 59.84 0.49 3.14 16 14 C -0.31 -8.80 9.30 -14.93 -0.14 -8.94 16 15 H 0.10 2.98 7.40 -52.49 -0.39 2.59 16 16 C 0.03 0.78 5.01 -17.46 -0.09 0.69 16 17 N -0.88 -24.04 10.78 55.50 0.60 -23.45 16 18 Si 0.92 21.13 29.58 -169.99 -5.03 16.10 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.72 7.38 -51.93 -0.38 0.34 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.09 1.22 8.03 -51.93 -0.42 0.81 16 33 H 0.05 1.22 7.76 -51.93 -0.40 0.81 16 34 H 0.03 0.55 6.73 -51.93 -0.35 0.20 16 35 H 0.07 1.74 6.81 -51.93 -0.35 1.39 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -31.14 295.61 -6.84 -37.98 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.99 Total: 1.05 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.59 Total: -6.87 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.23 Total: -35.69 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.09 Total: -17.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.14 -6.84 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387657667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.457 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds