Wall clock time and date at job start Sun Mar 29 2020 22:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47033 * 2 1 4 4 C 1.52998 * 109.47284 * 185.09331 * 3 2 1 5 5 C 1.50701 * 115.54982 * 295.03416 * 4 3 2 6 6 O 1.21294 * 120.00077 * 112.36170 * 5 4 3 7 7 N 1.34776 * 119.99837 * 292.08803 * 5 4 3 8 8 C 1.37099 * 119.99836 * 176.36748 * 7 5 4 9 9 H 1.08000 * 120.00159 * 340.74969 * 8 7 5 10 10 C 1.38947 * 119.99920 * 160.74407 * 8 7 5 11 11 N 1.31415 * 119.99937 * 0.08619 * 10 8 7 12 12 Si 1.86804 * 119.99996 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.46868 * 90.00528 * 12 10 8 14 14 H 1.48500 * 109.46960 * 210.00364 * 12 10 8 15 15 H 1.48501 * 109.46964 * 330.00311 * 12 10 8 16 16 C 1.46492 * 119.99900 * 356.37534 * 7 5 4 17 17 C 1.53002 * 109.46780 * 268.54881 * 16 7 5 18 18 C 1.53000 * 117.49630 * 80.70086 * 4 3 2 19 19 C 1.52999 * 117.49899 * 149.36202 * 4 3 2 20 20 H 1.09001 * 109.46988 * 300.00283 * 1 2 3 21 21 H 1.09001 * 109.47147 * 60.00039 * 1 2 3 22 22 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47321 * 240.00577 * 2 1 3 24 24 H 1.09001 * 109.47147 * 119.99961 * 2 1 3 25 25 H 1.08998 * 109.46871 * 65.09404 * 3 2 1 26 26 H 1.09006 * 109.46706 * 305.09380 * 3 2 1 27 27 H 0.96992 * 119.99934 * 179.97438 * 11 10 8 28 28 H 1.08994 * 109.47882 * 28.54929 * 16 7 5 29 29 H 1.09004 * 109.47263 * 148.55551 * 16 7 5 30 30 H 1.09002 * 109.47449 * 306.58011 * 17 16 7 31 31 H 1.09003 * 109.47295 * 66.58057 * 17 16 7 32 32 H 1.09008 * 109.47113 * 186.57404 * 17 16 7 33 33 H 1.09005 * 117.49877 * 215.00632 * 18 4 3 34 34 H 1.09000 * 117.50118 * 0.02562 * 18 4 3 35 35 H 1.08997 * 117.50029 * 359.97438 * 19 4 3 36 36 H 1.08997 * 117.49840 * 144.97862 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4445 -0.1281 5 6 4.3147 0.8338 1.0276 6 8 4.9274 -0.2016 0.8736 7 7 4.3093 1.4411 2.2308 8 6 4.9289 0.8484 3.3005 9 1 5.1448 -0.2097 3.2813 10 6 5.2791 1.6089 4.4094 11 7 5.0149 2.8960 4.4334 12 14 6.1240 0.8014 5.8667 13 1 7.5958 0.8532 5.6766 14 1 5.7600 1.5235 7.1123 15 1 5.6876 -0.6143 5.9698 16 6 3.6412 2.7343 2.3955 17 6 4.6460 3.8621 2.1519 18 6 4.1562 1.2659 -1.5277 19 6 4.2121 2.6331 -0.8415 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.7531 1.9293 0.9321 26 1 1.6040 1.9820 -0.8409 27 1 5.2590 3.4268 5.2076 28 1 2.8238 2.8150 1.6790 29 1 3.2457 2.8126 3.4082 30 1 5.5187 3.7150 2.7882 31 1 4.9536 3.8551 1.1062 32 1 4.1816 4.8197 2.3876 33 1 5.0879 0.7066 -1.6127 34 1 3.4592 1.1474 -2.3574 35 1 3.5519 3.4134 -1.2200 36 1 5.1804 2.9735 -0.4748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389254092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:56 Heat of formation + Delta-G solvation = -20.741467 kcal Electronic energy + Delta-G solvation = -16644.188406 eV Core-core repulsion = 14129.031261 eV Total energy + Delta-G solvation = -2515.157146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05431 -37.95814 -36.93551 -34.64355 -33.55475 -31.17665 -28.56053 -27.04244 -24.22070 -23.52848 -23.34620 -22.11645 -19.86484 -18.71524 -17.59824 -16.88001 -16.21006 -15.97555 -15.71456 -15.12736 -14.73946 -14.50007 -14.10507 -13.88118 -13.51871 -13.13578 -13.04047 -12.75985 -12.62406 -12.54142 -12.40658 -12.18288 -12.05477 -11.85248 -11.73985 -11.45183 -11.11242 -10.72449 -10.66876 -10.18953 -9.53287 -8.15529 -5.91342 1.35788 1.39610 1.50699 2.04497 2.26728 2.83195 3.07506 3.22993 3.72944 3.96493 4.02173 4.08654 4.30656 4.41661 4.54468 4.57819 4.75478 4.87531 4.91277 4.99909 5.01770 5.07002 5.08229 5.13057 5.23967 5.31234 5.35950 5.40133 5.42731 5.49936 5.61697 6.12535 6.15409 6.61761 7.22316 7.56639 8.12224 8.69722 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.009350 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.033693 B = 2993.973013 C = 3189.042003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.072 4.072 4 C -0.153 4.153 5 C 0.469 3.531 6 O -0.645 6.645 7 N -0.450 5.450 8 C -0.340 4.340 9 H 0.064 0.936 10 C -0.004 4.004 11 N -0.875 5.875 12 Si 0.986 3.014 13 H -0.279 1.279 14 H -0.266 1.266 15 H -0.278 1.278 16 C 0.132 3.868 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.147 4.147 20 H 0.052 0.948 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 3.815 -7.318 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C -0.109 4.109 4 C -0.156 4.156 5 C 0.259 3.741 6 O -0.534 6.534 7 N -0.168 5.168 8 C -0.468 4.468 9 H 0.082 0.918 10 C -0.205 4.205 11 N -0.514 5.514 12 Si 0.811 3.189 13 H -0.205 1.205 14 H -0.190 1.190 15 H -0.203 1.203 16 C 0.010 3.990 17 C -0.197 4.197 18 C -0.183 4.183 19 C -0.184 4.184 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.435 3.510 -7.187 10.920 hybrid contribution 0.907 -0.647 1.131 1.588 sum -6.528 2.863 -6.055 9.353 Atomic orbital electron populations 1.21716 0.93496 1.02089 1.02579 1.21422 0.97237 0.96584 1.00542 1.21269 0.88905 0.97388 1.03339 1.21310 0.96386 1.05370 0.92527 1.20026 0.84300 0.85953 0.83830 1.90439 1.50301 1.28334 1.84346 1.43941 1.46672 1.19248 1.06905 1.19599 1.37335 0.94101 0.95751 0.91825 1.25958 0.97366 0.96054 1.01100 1.70323 1.45864 1.05238 1.29990 0.85045 0.78213 0.78050 0.77635 1.20459 1.19029 1.20293 1.21501 0.94331 0.82209 1.01005 1.22275 1.01820 0.96790 0.98784 1.22970 1.02390 0.99226 0.93746 1.23182 1.02006 0.91546 1.01658 0.92845 0.90569 0.92485 0.92032 0.96126 0.91550 0.87879 0.92027 0.91271 0.91269 0.91371 0.94997 0.92819 0.91089 0.85227 0.84822 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.12 -3.75 5.73 30.60 0.18 -3.58 16 3 C -0.07 -2.18 4.73 30.60 0.14 -2.03 16 4 C -0.15 -5.71 0.82 -52.93 -0.04 -5.75 16 5 C 0.47 24.24 6.35 87.66 0.56 24.80 16 6 O -0.65 -39.18 16.44 -3.07 -0.05 -39.23 16 7 N -0.45 -24.01 2.62 -635.55 -1.67 -25.68 16 8 C -0.34 -19.92 9.37 84.04 0.79 -19.13 16 9 H 0.06 4.05 7.36 -2.91 -0.02 4.02 16 10 C 0.00 -0.20 5.34 84.93 0.45 0.25 16 11 N -0.87 -44.89 7.22 21.66 0.16 -44.73 16 12 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C 0.13 5.98 5.04 86.38 0.44 6.42 16 17 C -0.14 -5.93 9.31 71.98 0.67 -5.26 16 18 C -0.15 -4.68 9.78 30.62 0.30 -4.39 16 19 C -0.15 -4.55 8.55 30.62 0.26 -4.28 16 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.02 0.80 7.86 -2.39 -0.02 0.78 16 25 H 0.07 2.12 5.74 -2.39 -0.01 2.11 16 26 H 0.10 2.30 8.09 -2.38 -0.02 2.28 16 27 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.07 2.69 4.21 -2.39 -0.01 2.68 16 29 H 0.07 3.43 6.38 -2.39 -0.02 3.42 16 30 H 0.07 3.42 5.69 -2.39 -0.01 3.40 16 31 H 0.03 1.25 5.17 -2.39 -0.01 1.23 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.07 2.64 8.03 -2.38 -0.02 2.63 16 34 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.08 2.71 6.63 -2.39 -0.02 2.69 16 Total: -1.00 -67.82 282.56 5.98 -61.85 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.06 Total: 17.77 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 4.45 Total: -15.53 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.51 Total: -70.41 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.05 Total: -39.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.82 5.98 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.107 kcal (2) G-P(sol) polarization free energy of solvation -67.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds