Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 115.54893 * 2 1 4 4 C 1.50706 * 109.46922 * 279.64008 * 3 2 1 5 5 O 1.21283 * 120.00206 * 5.53958 * 4 3 2 6 6 N 1.34774 * 120.00051 * 185.54252 * 4 3 2 7 7 C 1.46501 * 120.00019 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46908 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46619 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46780 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99691 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99644 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00274 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99676 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47193 * 89.99808 * 14 12 10 16 16 H 1.48496 * 109.47183 * 209.99721 * 14 12 10 17 17 H 1.48501 * 109.47514 * 330.00027 * 14 12 10 18 18 C 1.52996 * 117.51663 * 145.69462 * 2 1 3 19 19 C 1.52992 * 117.49972 * 214.32623 * 2 1 3 20 20 H 1.09001 * 109.46767 * 65.00525 * 1 2 3 21 21 H 1.08999 * 109.46743 * 185.00024 * 1 2 3 22 22 H 1.09002 * 109.47358 * 305.00056 * 1 2 3 23 23 H 1.09002 * 109.47563 * 159.64128 * 3 2 1 24 24 H 1.09007 * 109.47391 * 39.63515 * 3 2 1 25 25 H 0.97002 * 119.99734 * 359.97438 * 6 4 3 26 26 H 1.08999 * 109.47164 * 299.99890 * 7 6 4 27 27 H 1.09003 * 109.46732 * 60.00150 * 7 6 4 28 28 H 1.08999 * 109.47467 * 300.00131 * 8 7 6 29 29 H 1.09001 * 109.46442 * 60.00636 * 8 7 6 30 30 H 1.08999 * 109.47568 * 300.00387 * 9 8 7 31 31 H 1.09003 * 109.46617 * 60.00823 * 9 8 7 32 32 H 0.97007 * 120.00064 * 180.02562 * 13 12 10 33 33 H 1.08996 * 117.50144 * 214.96765 * 18 2 1 34 34 H 1.08997 * 117.50266 * 359.97438 * 18 2 1 35 35 H 1.09007 * 117.50135 * 359.97438 * 19 2 1 36 36 H 1.09006 * 117.49909 * 145.00023 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1918 1.9362 -1.4008 5 8 1.6247 1.3388 -2.2911 6 7 2.8239 3.0970 -1.6643 7 6 2.8263 3.6370 -3.0262 8 6 3.6063 4.9530 -3.0516 9 6 3.6093 5.5166 -4.4740 10 6 4.3782 6.8125 -4.4992 11 1 4.8208 7.1955 -3.5916 12 6 4.5166 7.5091 -5.6810 13 7 3.9772 7.0429 -6.7861 14 14 5.4702 9.1150 -5.7124 15 1 6.9005 8.8359 -5.9981 16 1 4.9174 9.9984 -6.7702 17 1 5.3510 9.7874 -4.3937 18 6 2.2369 -1.1209 0.7647 19 6 2.2365 -1.1207 -0.7652 20 1 -0.3633 0.4342 -0.9314 21 1 -0.3633 -1.0238 0.0896 22 1 -0.3634 0.5895 0.8418 23 1 3.2159 1.2927 0.3575 24 1 1.6325 2.0496 0.6556 25 1 3.2772 3.5749 -0.9523 26 1 3.2978 2.9216 -3.6999 27 1 1.8003 3.8169 -3.3474 28 1 3.1344 5.6683 -2.3780 29 1 4.6323 4.7734 -2.7302 30 1 4.0815 4.8012 -5.1474 31 1 2.5834 5.6961 -4.7958 32 1 4.0749 7.5329 -7.6177 33 1 3.1721 -0.8749 1.2677 34 1 1.6120 -1.8583 1.2684 35 1 1.6112 -1.8584 -1.2684 36 1 3.1714 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401380694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = -62.889027 kcal Electronic energy + Delta-G solvation = -14972.553426 eV Core-core repulsion = 12455.568625 eV Total energy + Delta-G solvation = -2516.984801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91204 -38.57378 -36.82647 -35.15931 -33.11705 -30.74860 -29.23382 -28.04166 -24.91997 -23.26828 -22.30263 -21.64735 -19.84972 -18.54086 -17.78108 -16.92349 -16.81146 -16.45837 -16.06377 -15.52321 -14.93362 -14.79010 -14.26345 -13.77833 -13.69701 -13.64360 -13.17921 -12.86662 -12.71277 -12.55388 -12.39035 -12.32403 -12.10653 -11.67745 -11.58490 -11.25908 -11.17578 -10.84186 -10.56403 -10.40521 -10.03192 -8.20222 -6.32138 1.41505 1.43050 1.54092 1.73975 2.22103 2.42402 2.98701 3.13466 3.71443 3.88245 3.94164 4.12269 4.15769 4.20766 4.32417 4.54655 4.62041 4.71806 4.82879 4.93369 4.98142 4.98946 5.03637 5.08673 5.15791 5.19754 5.29499 5.40931 5.47110 5.54736 5.69316 5.83065 6.21202 6.66841 6.85625 7.36382 7.37971 8.91975 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.076163 B = 0.003844 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.546150 B = 7282.558331 C = 7392.056158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.097 4.097 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.720 5.720 7 C 0.131 3.869 8 C -0.101 4.101 9 C 0.022 3.978 10 C -0.542 4.542 11 H 0.067 0.933 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.259 1.259 18 C -0.149 4.149 19 C -0.181 4.181 20 H 0.038 0.962 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.415 0.585 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.068 0.932 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.263 0.737 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -11.924 18.520 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.137 4.137 4 C 0.289 3.711 5 O -0.461 6.461 6 N -0.373 5.373 7 C 0.006 3.994 8 C -0.139 4.139 9 C -0.015 4.015 10 C -0.580 4.580 11 H 0.085 0.915 12 C -0.202 4.202 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.183 1.183 18 C -0.186 4.186 19 C -0.219 4.219 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.135 0.865 24 H 0.141 0.859 25 H 0.252 0.748 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.820 -12.307 17.714 21.753 hybrid contribution 0.487 0.984 -0.728 1.317 sum -2.333 -11.323 16.986 20.547 Atomic orbital electron populations 1.21284 0.91978 1.02181 1.01432 1.21171 0.95130 0.89928 1.06315 1.21293 1.04371 0.95957 0.92033 1.21455 0.77298 0.80102 0.92198 1.90679 1.45693 1.60225 1.49473 1.46058 1.55859 1.24098 1.11286 1.21161 0.99571 0.95067 0.83573 1.21591 0.99640 0.94183 0.98481 1.18957 0.95248 0.94916 0.92400 1.21688 1.33824 1.07299 0.95145 0.91456 1.26050 0.96843 1.02027 0.95285 1.70117 1.46273 1.41045 1.00187 0.85390 0.78509 0.78524 0.78271 1.19789 1.21053 1.18320 1.23244 1.02512 0.99705 0.93157 1.22858 1.01962 1.01744 0.95300 0.94272 0.91893 0.90835 0.86504 0.85940 0.74806 0.93723 0.93663 0.91328 0.91370 0.99123 0.99078 0.92800 0.87189 0.87468 0.89669 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.66 71.98 0.70 -1.47 16 2 C -0.12 -2.41 1.59 -52.19 -0.08 -2.49 16 3 C -0.10 -1.72 5.64 29.85 0.17 -1.55 16 4 C 0.50 14.02 7.68 87.66 0.67 14.69 16 5 O -0.58 -21.77 14.96 -3.04 -0.05 -21.81 16 6 N -0.72 -19.52 5.56 -463.04 -2.57 -22.09 16 7 C 0.13 4.70 5.67 86.38 0.49 5.19 16 8 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 11 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 12 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 13 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 14 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 C -0.15 -2.17 9.87 30.59 0.30 -1.86 16 19 C -0.18 -3.88 9.19 30.59 0.28 -3.60 16 20 H 0.04 0.98 7.60 -2.39 -0.02 0.97 16 21 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.12 1.48 7.95 -2.39 -0.02 1.46 16 24 H 0.12 1.59 8.13 -2.38 -0.02 1.57 16 25 H 0.42 8.21 8.47 -92.71 -0.79 7.43 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 33 H 0.11 1.23 8.08 -2.39 -0.02 1.21 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -70.87 304.55 3.48 -67.39 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.25 Total: 11.43 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.53 Total: -23.48 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.29 Total: -79.41 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.87 3.48 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401380694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.498 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds