Wall clock time and date at job start Sun Mar 29 2020 21:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48506 * 109.46829 * 240.00010 * 3 2 1 5 5 H 1.48502 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47421 * 120.00188 * 3 2 1 7 7 C 1.37882 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00434 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00033 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47289 * 275.00400 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47518 * 59.99828 * 16 15 14 18 18 C 1.53005 * 109.46632 * 300.00318 * 17 16 15 19 19 C 1.52996 * 109.47571 * 60.00168 * 18 17 16 20 20 H 0.97005 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47165 * 59.99891 * 9 7 2 22 22 H 1.09007 * 109.47162 * 299.99973 * 9 7 2 23 23 H 1.09001 * 109.47368 * 59.99888 * 10 9 7 24 24 H 1.08997 * 109.46928 * 300.00051 * 10 9 7 25 25 H 0.97000 * 120.00155 * 0.02562 * 13 11 10 26 26 H 1.09001 * 109.47060 * 35.00669 * 14 13 11 27 27 H 1.09001 * 109.46832 * 299.99854 * 15 14 13 28 28 H 1.08996 * 109.46952 * 59.99873 * 15 14 13 29 29 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 30 30 H 1.09004 * 109.47552 * 179.97438 * 16 15 14 31 31 H 1.08992 * 109.47399 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47194 * 59.99866 * 17 16 15 33 33 H 1.09001 * 109.47420 * 299.99415 * 18 17 16 34 34 H 1.09004 * 109.46832 * 179.97438 * 18 17 16 35 35 H 1.08992 * 109.47346 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47364 * 59.99212 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9671 0.0033 12 8 0.2789 -4.9672 0.0033 13 7 2.1657 -6.1343 0.0037 14 6 1.4332 -7.4031 0.0048 15 6 1.0698 -7.7810 1.4421 16 6 0.3054 -9.1063 1.4433 17 6 1.1828 -10.2018 0.8342 18 6 1.5462 -9.8238 -0.6032 19 6 2.3107 -8.4985 -0.6044 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8720 -3.6035 0.8927 24 1 2.8720 -3.6051 -0.8873 25 1 3.1357 -6.1343 0.0040 26 1 0.5223 -7.2972 -0.5844 27 1 1.9808 -7.8869 2.0313 28 1 0.4451 -7.0004 1.8761 29 1 -0.6055 -9.0009 0.8540 30 1 0.0469 -9.3759 2.4673 31 1 0.6381 -11.1458 0.8346 32 1 2.0938 -10.3073 1.4234 33 1 0.6353 -9.7183 -1.1925 34 1 2.1717 -10.6040 -1.0370 35 1 2.5691 -8.2290 -1.6284 36 1 3.2216 -8.6040 -0.0151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589680526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:20 Heat of formation + Delta-G solvation = -78.948247 kcal Electronic energy + Delta-G solvation = -15409.500802 eV Core-core repulsion = 12891.819621 eV Total energy + Delta-G solvation = -2517.681181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63309 -37.81155 -33.85815 -33.40285 -31.04831 -30.86454 -29.14425 -25.60469 -22.82690 -22.61278 -21.13393 -20.12568 -19.30919 -16.83150 -16.23713 -15.58895 -14.99662 -14.78340 -14.40595 -14.18943 -14.08331 -13.31649 -12.79838 -12.75009 -12.31523 -12.12525 -12.04825 -11.30698 -11.26234 -11.13239 -10.89238 -10.79272 -10.60592 -10.51038 -10.28451 -9.91428 -9.62355 -9.13638 -8.93856 -8.68048 -8.29086 -5.93453 -3.97864 3.32161 3.36120 3.40491 3.42176 3.60293 4.49581 4.58331 4.64583 4.81377 5.05427 5.15683 5.34027 5.37675 5.39263 5.41240 5.51717 5.61392 5.70169 5.88457 5.93809 5.99035 6.04887 6.12258 6.26096 6.27353 6.33046 6.36653 6.86960 6.94223 7.76962 7.89980 7.98219 8.10435 8.41981 8.86131 9.10919 9.65429 11.17480 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.073012 B = 0.004537 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.408862 B = 6170.255940 C = 6332.140609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.742 5.742 14 C 0.144 3.856 15 C -0.130 4.130 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.126 4.126 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.395 0.605 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -19.395 0.674 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.395 5.395 14 C 0.039 3.961 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.164 4.164 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.229 0.771 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.749 -19.247 0.665 19.835 hybrid contribution 0.968 0.923 0.037 1.338 sum 5.717 -18.324 0.702 19.208 Atomic orbital electron populations 1.69993 1.06057 1.26660 1.50166 1.25026 0.94820 0.99196 0.95319 0.86652 0.79542 0.83195 0.78529 1.20263 1.21287 1.20261 1.21199 0.92888 0.91074 1.51441 0.92681 1.18889 0.93184 0.89379 0.98579 1.21863 1.00701 0.92119 1.02380 1.21549 0.88681 0.85725 0.74252 1.90660 1.14477 1.87653 1.48290 1.46297 1.09872 1.05550 1.77740 1.20867 0.95979 0.82937 0.96287 1.21929 1.00506 0.97372 0.97063 1.21501 0.98691 0.94495 1.00858 1.21566 0.99871 0.98226 0.96115 1.21482 1.00389 0.96427 0.97087 1.21802 0.98682 0.94654 1.01224 0.92914 0.95854 0.95867 0.90339 0.90348 0.77129 0.89799 0.92080 0.91233 0.91757 0.91942 0.92094 0.92044 0.91694 0.91794 0.91414 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 11 C 0.51 10.04 7.79 -10.99 -0.09 9.96 16 12 O -0.54 -12.90 15.65 5.55 0.09 -12.81 16 13 N -0.74 -10.73 5.08 -53.80 -0.27 -11.00 16 14 C 0.14 1.87 2.46 -67.93 -0.17 1.71 16 15 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 16 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 17 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.13 -1.20 5.39 -26.73 -0.14 -1.35 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 22 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 23 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 24 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 26 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -33.46 294.37 -7.94 -41.40 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.20 Total: -0.89 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.71 Total: -10.95 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.46 Total: -38.03 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.46 -7.94 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589680526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.545 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds