Wall clock time and date at job start Sun Mar 29 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47655 * 2 1 4 4 C 1.52995 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.09008 * 115.55064 * 29.27680 * 4 3 2 6 6 C 1.53000 * 117.49920 * 243.60899 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.47484 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 C 1.50706 * 117.49668 * 252.51929 * 7 6 4 10 10 O 1.21277 * 120.00023 * 68.61167 * 9 7 6 11 11 N 1.34780 * 119.99945 * 248.60941 * 9 7 6 12 12 C 1.46494 * 120.00116 * 0.02562 * 11 9 7 13 13 C 1.46496 * 119.99685 * 180.02562 * 11 9 7 14 14 C 1.50706 * 109.47261 * 90.00229 * 13 11 9 15 15 H 1.08004 * 119.99452 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00174 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99896 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47212 * 59.99497 * 18 16 14 20 20 H 1.48498 * 109.47531 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46875 * 299.99616 * 18 16 14 22 22 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46973 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46825 * 59.99933 * 1 2 3 25 25 H 1.09007 * 109.47118 * 239.99570 * 2 1 3 26 26 H 1.09003 * 109.46825 * 120.00067 * 2 1 3 27 27 H 1.08995 * 109.46784 * 59.99706 * 3 2 1 28 28 H 1.08999 * 109.46571 * 300.00015 * 3 2 1 29 29 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 30 30 H 1.09002 * 117.49953 * 144.97630 * 6 4 3 31 31 H 1.09007 * 109.47182 * 89.99961 * 12 11 9 32 32 H 1.08996 * 109.47035 * 209.99769 * 12 11 9 33 33 H 1.09004 * 109.47031 * 329.99932 * 12 11 9 34 34 H 1.08999 * 109.47152 * 209.99964 * 13 11 9 35 35 H 1.09002 * 109.47677 * 329.99971 * 13 11 9 36 36 H 0.97005 * 119.99869 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0404 0.5844 -0.4800 6 6 4.2761 2.0457 1.2166 7 6 4.2778 2.7945 -0.1178 8 1 3.6534 3.6845 -0.1963 9 6 5.5713 2.8375 -0.8898 10 8 6.0135 1.8245 -1.3891 11 7 6.2367 4.0017 -1.0255 12 6 5.7029 5.2251 -0.4220 13 6 7.4939 4.0435 -1.7765 14 6 7.2032 4.3315 -3.2270 15 1 6.1839 4.4690 -3.5564 16 6 8.2385 4.4192 -4.1333 17 7 9.4798 4.2522 -3.7319 18 14 7.8783 4.7768 -5.9309 19 1 7.1883 6.0866 -6.0465 20 1 9.1526 4.8191 -6.6923 21 1 7.0076 3.7082 -6.4833 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 3.6505 2.4432 2.0158 30 1 5.2106 1.5846 1.5361 31 1 6.0926 5.3308 0.5906 32 1 6.0042 6.0860 -1.0188 33 1 4.6148 5.1690 -0.3886 34 1 8.1331 4.8280 -1.3714 35 1 8.0003 3.0821 -1.6913 36 1 10.2082 4.3143 -4.3695 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589683142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:30 Heat of formation + Delta-G solvation = -50.948013 kcal Electronic energy + Delta-G solvation = -15409.057147 eV Core-core repulsion = 12892.590147 eV Total energy + Delta-G solvation = -2516.467000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96980 -38.22375 -36.55477 -34.85189 -34.55483 -30.11466 -28.32701 -27.33251 -25.89238 -23.53445 -22.68159 -21.40494 -19.77280 -18.72824 -18.05346 -17.18351 -16.37079 -16.14584 -15.98868 -15.32377 -14.86978 -14.27433 -14.11622 -13.81857 -13.66356 -13.47612 -13.19016 -13.05025 -12.96141 -12.70786 -12.53650 -12.22298 -12.17150 -11.90689 -11.76238 -11.62982 -11.10988 -10.85462 -10.66407 -10.57559 -9.44275 -8.24903 -6.40713 1.34584 1.39555 1.46890 1.67557 2.28739 2.42284 2.92210 3.04116 3.60147 3.79074 3.89000 4.15462 4.22582 4.31815 4.40545 4.49977 4.66274 4.71300 4.82571 4.88101 4.94482 4.96312 4.99414 5.05495 5.11782 5.20270 5.23875 5.40286 5.44019 5.52899 5.55045 5.82064 6.02909 6.66348 6.77039 7.25158 7.46711 8.82168 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.005705 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.042003 B = 4907.061532 C = 5306.262661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.125 4.125 5 H 0.082 0.918 6 C -0.127 4.127 7 C -0.193 4.193 8 H 0.150 0.850 9 C 0.518 3.482 10 O -0.605 6.605 11 N -0.608 5.608 12 C 0.081 3.919 13 C 0.258 3.742 14 C -0.547 4.547 15 H 0.052 0.948 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.970 3.030 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.279 1.279 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.025 0.975 35 H -0.006 1.006 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 -0.902 10.710 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.117 4.117 4 C -0.144 4.144 5 H 0.100 0.900 6 C -0.164 4.164 7 C -0.214 4.214 8 H 0.168 0.832 9 C 0.308 3.692 10 O -0.487 6.487 11 N -0.338 5.338 12 C -0.061 4.061 13 C 0.137 3.863 14 C -0.585 4.585 15 H 0.070 0.930 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.794 3.206 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.204 1.204 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.013 0.987 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.495 -1.369 10.403 19.550 hybrid contribution 0.769 0.047 -1.245 1.464 sum -15.725 -1.321 9.158 18.246 Atomic orbital electron populations 1.21753 0.94580 1.02049 1.02252 1.21508 0.96662 0.96186 1.01798 1.21212 0.89548 0.97847 1.03081 1.22468 0.96219 0.94146 1.01596 0.89983 1.23176 1.02522 1.00528 0.90147 1.22371 0.95982 1.00091 1.02934 0.83228 1.20539 0.86030 0.82571 0.80049 1.90607 1.70414 1.35966 1.51754 1.48130 1.24213 1.09261 1.52196 1.21936 1.00387 0.85756 0.98049 1.18766 0.81586 0.95428 0.90562 1.21675 0.93247 1.49248 0.94343 0.92955 1.25902 0.94577 0.94650 1.04069 1.70054 0.99659 1.50249 1.36891 0.85429 0.77733 0.79127 0.78292 1.18247 1.20069 1.20416 0.92362 0.91611 0.92859 0.93443 0.91490 0.89189 0.91746 0.83961 0.90160 0.91187 0.91625 0.88707 0.95732 0.98738 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -2.25 5.89 30.59 0.18 -2.07 16 3 C -0.08 -1.53 5.50 30.59 0.17 -1.36 16 4 C -0.13 -3.38 5.25 -10.77 -0.06 -3.43 16 5 H 0.08 2.79 7.60 -2.38 -0.02 2.77 16 6 C -0.13 -2.97 9.88 30.60 0.30 -2.67 16 7 C -0.19 -5.77 5.01 -11.51 -0.06 -5.83 16 8 H 0.15 3.48 6.44 -2.39 -0.02 3.46 16 9 C 0.52 23.19 7.46 87.66 0.65 23.85 16 10 O -0.60 -33.75 15.84 -3.02 -0.05 -33.80 16 11 N -0.61 -27.41 2.86 -851.13 -2.43 -29.84 16 12 C 0.08 2.53 10.27 127.77 1.31 3.84 16 13 C 0.26 14.63 5.16 85.64 0.44 15.07 16 14 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.41 5.46 84.65 0.46 0.88 16 17 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 18 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.14 2.14 8.03 -2.39 -0.02 2.12 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.09 2.26 5.99 -2.38 -0.01 2.24 16 34 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 35 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -76.47 302.77 5.22 -71.24 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.47 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 4.36 Total: -5.66 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.15 Total: -87.16 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.47 5.22 -71.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589683142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.296 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds