Wall clock time and date at job start Sun Mar 29 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.53002 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.55889 * 29.31331 * 4 3 2 6 6 C 1.52996 * 117.50138 * 243.62296 * 4 3 2 7 7 C 1.53002 * 117.49919 * 174.99472 * 4 3 2 8 8 H 1.08998 * 117.51677 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.50072 * 214.97997 * 7 4 3 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99675 * 180.26760 * 9 7 4 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 H 1.09001 * 109.47884 * 324.99780 * 12 11 9 14 14 C 1.53008 * 109.47335 * 84.99977 * 12 11 9 15 15 C 1.50701 * 109.47133 * 204.99448 * 12 11 9 16 16 H 1.08002 * 120.00022 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00302 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 12 19 19 Si 1.86801 * 119.99937 * 359.97438 * 17 15 12 20 20 H 1.48502 * 109.46577 * 89.99872 * 19 17 15 21 21 H 1.48495 * 109.47267 * 209.99969 * 19 17 15 22 22 H 1.48494 * 109.47095 * 330.00340 * 19 17 15 23 23 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46836 * 300.00198 * 1 2 3 25 25 H 1.09004 * 109.47037 * 59.99871 * 1 2 3 26 26 H 1.09003 * 109.47217 * 240.00150 * 2 1 3 27 27 H 1.09001 * 109.47521 * 119.99971 * 2 1 3 28 28 H 1.09000 * 109.47498 * 60.00208 * 3 2 1 29 29 H 1.09002 * 109.47008 * 299.99522 * 3 2 1 30 30 H 1.08992 * 117.50251 * 145.02429 * 6 4 3 31 31 H 1.09000 * 117.51782 * 359.97438 * 6 4 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 33 33 H 1.08994 * 109.47201 * 59.99659 * 14 12 11 34 34 H 1.08995 * 109.47273 * 180.02562 * 14 12 11 35 35 H 1.08998 * 109.46811 * 299.99762 * 14 12 11 36 36 H 0.97000 * 119.99653 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0456 1.2166 7 6 4.2765 2.7945 -0.1177 8 1 3.6516 3.6841 -0.1955 9 6 5.5697 2.8386 -0.8903 10 8 6.0126 1.8259 -1.3895 11 7 6.2369 4.0023 -1.0214 12 6 7.4970 4.0440 -1.7673 13 1 8.0438 3.1144 -1.6094 14 6 7.2014 4.2146 -3.2589 15 6 8.3286 5.2042 -1.2842 16 1 7.9559 5.8460 -0.4996 17 6 9.5653 5.4463 -1.8438 18 7 10.2912 6.4585 -1.4217 19 14 10.2103 4.3358 -3.2003 20 1 9.7849 4.8680 -4.5197 21 1 11.6933 4.2903 -3.1396 22 1 9.6652 2.9663 -3.0199 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.2109 1.5850 1.5356 31 1 3.6507 2.4429 2.0162 32 1 5.8826 4.8121 -0.6219 33 1 6.6547 5.1442 -3.4169 34 1 8.1390 4.2452 -3.8139 35 1 6.5999 3.3755 -3.6083 36 1 11.1610 6.6291 -1.8157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589696937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:36 Heat of formation + Delta-G solvation = -34.364291 kcal Electronic energy + Delta-G solvation = -15318.793085 eV Core-core repulsion = 12803.045210 eV Total energy + Delta-G solvation = -2515.747876 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49727 -37.12694 -34.92130 -33.85682 -32.33724 -29.94135 -27.52948 -25.21010 -23.97902 -22.05002 -20.89054 -20.22831 -19.44636 -17.35556 -16.12554 -15.52463 -15.30669 -14.75487 -14.57651 -13.85625 -13.51255 -13.26612 -12.93227 -12.73710 -12.24661 -12.18462 -12.02398 -11.79387 -11.41253 -11.24350 -11.07343 -10.93372 -10.80419 -10.18382 -10.12298 -9.90769 -9.68426 -9.21341 -9.07845 -8.74440 -8.11629 -6.19979 -4.22301 3.05961 3.24375 3.36139 3.41257 3.82890 4.09597 4.32815 4.67190 4.85106 4.89058 5.06049 5.09355 5.15131 5.26481 5.43671 5.50391 5.61378 5.68693 5.76233 5.79305 5.92343 6.06257 6.14278 6.14585 6.33189 6.40094 6.41266 6.58092 6.87804 7.22139 7.32725 7.54448 8.18566 8.57033 8.77689 8.99574 9.41263 10.92267 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.060327 B = 0.005068 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.023527 B = 5524.022200 C = 5722.635535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.123 4.123 5 H 0.116 0.884 6 C -0.150 4.150 7 C -0.186 4.186 8 H 0.118 0.882 9 C 0.531 3.469 10 O -0.559 6.559 11 N -0.698 5.698 12 C 0.236 3.764 13 H 0.048 0.952 14 C -0.161 4.161 15 C -0.534 4.534 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.262 1.262 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.396 0.604 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 -8.242 3.181 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.142 4.142 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.207 4.207 8 H 0.136 0.864 9 C 0.316 3.684 10 O -0.439 6.439 11 N -0.345 5.345 12 C 0.132 3.868 13 H 0.065 0.935 14 C -0.219 4.219 15 C -0.572 4.572 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.187 1.187 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.229 0.771 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.666 -8.833 2.796 18.201 hybrid contribution 0.358 0.154 -0.597 0.713 sum -15.309 -8.680 2.199 17.735 Atomic orbital electron populations 1.21783 0.96051 1.01467 1.01706 1.21505 0.95438 0.96736 1.02328 1.21228 0.92291 0.97094 1.02008 1.22405 0.94252 0.96064 1.01432 0.86591 1.23053 1.02945 1.02450 0.90348 1.22363 0.98413 0.98105 1.01830 0.86362 1.19585 0.84611 0.83951 0.80209 1.90631 1.68964 1.34286 1.49980 1.46121 1.24566 1.09652 1.54136 1.19103 0.81378 0.98846 0.87460 0.93464 1.22446 1.00142 1.00134 0.99167 1.21055 1.01875 1.12188 1.22119 0.90197 1.24838 0.96217 0.94904 0.96634 1.69872 1.12205 1.28511 1.42427 0.86863 0.77161 0.82199 0.82192 1.20291 1.22142 1.18689 0.92878 0.92854 0.92783 0.91813 0.91857 0.91790 0.91532 0.88374 0.88193 0.77101 0.92825 0.93479 0.94567 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.10 5.89 -26.73 -0.16 -1.26 16 3 C -0.09 -0.88 5.50 -26.73 -0.15 -1.03 16 4 C -0.12 -1.57 5.25 -90.62 -0.48 -2.04 16 5 H 0.12 1.70 7.60 -51.92 -0.39 1.31 16 6 C -0.15 -1.88 9.88 -26.73 -0.26 -2.14 16 7 C -0.19 -2.67 5.91 -91.77 -0.54 -3.22 16 8 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 9 C 0.53 10.42 7.58 -10.98 -0.08 10.33 16 10 O -0.56 -13.01 15.92 5.55 0.09 -12.92 16 11 N -0.70 -14.35 5.07 -54.93 -0.28 -14.63 16 12 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 13 H 0.05 1.28 6.64 -51.93 -0.34 0.94 16 14 C -0.16 -3.69 8.96 37.16 0.33 -3.36 16 15 C -0.53 -14.71 9.31 -34.44 -0.32 -15.03 16 16 H 0.08 2.30 7.98 -52.49 -0.42 1.89 16 17 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 18 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 19 Si 0.89 22.09 24.37 -169.99 -4.14 17.95 16 20 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.56 7.87 -51.93 -0.41 0.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 32 H 0.40 7.17 8.54 -40.82 -0.35 6.83 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 295.28 15.07 4.45 4.45 Total: -1.00 -31.38 295.28 -6.56 -37.94 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.91 Total: 3.95 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.53 Total: -10.79 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.50 Total: -40.57 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.38 -6.56 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589696937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.574 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds