Wall clock time and date at job start Sun Mar 29 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55348 * 2 1 4 4 C 1.53002 * 117.49807 * 214.33034 * 2 1 3 5 5 C 1.53003 * 117.49978 * 145.67222 * 2 1 3 6 6 H 1.08997 * 117.49922 * 214.97679 * 5 2 1 7 7 C 1.52998 * 117.49755 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.47262 * 185.00122 * 7 5 2 9 9 C 1.34780 * 120.00173 * 179.97438 * 8 7 5 10 10 O 1.21275 * 119.99732 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46984 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99760 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99790 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00245 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99741 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47145 * 90.00150 * 17 15 13 19 19 H 1.48498 * 109.47018 * 209.99757 * 17 15 13 20 20 H 1.48499 * 109.47293 * 330.00114 * 17 15 13 21 21 H 1.09002 * 109.47153 * 34.41373 * 1 2 3 22 22 H 1.09001 * 109.46832 * 274.41564 * 1 2 3 23 23 H 1.09004 * 109.47261 * 154.41545 * 1 2 3 24 24 H 1.09007 * 109.46996 * 85.58197 * 3 2 1 25 25 H 1.08995 * 109.47579 * 205.58373 * 3 2 1 26 26 H 1.08997 * 109.47014 * 325.58756 * 3 2 1 27 27 H 1.09003 * 117.49882 * 0.02562 * 4 2 1 28 28 H 1.09002 * 117.49659 * 145.01809 * 4 2 1 29 29 H 1.09003 * 109.46895 * 304.99503 * 7 5 2 30 30 H 1.09001 * 109.47633 * 64.99520 * 7 5 2 31 31 H 0.96998 * 119.99521 * 359.97438 * 8 7 5 32 32 H 1.09003 * 109.46859 * 299.99572 * 11 9 8 33 33 H 1.08992 * 109.47440 * 59.99733 * 11 9 8 34 34 H 1.08995 * 109.46815 * 300.00077 * 12 11 9 35 35 H 1.09006 * 109.47074 * 59.99986 * 12 11 9 36 36 H 0.96993 * 120.00099 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1208 0.7653 6 1 3.1715 -0.8748 1.2685 7 6 1.3588 -2.1554 1.4726 8 7 2.2058 -3.0697 2.2426 9 6 1.6467 -4.0696 2.9526 10 8 0.4423 -4.2121 2.9544 11 6 2.5181 -5.0104 3.7442 12 6 1.6403 -6.0442 4.4526 13 6 2.5117 -6.9854 5.2437 14 1 3.5842 -6.8586 5.2418 15 6 1.9397 -8.0083 5.9699 16 7 0.6336 -8.1624 5.9727 17 14 3.0198 -9.1745 6.9511 18 1 3.2075 -8.6389 8.3234 19 1 2.3696 -10.5076 7.0248 20 1 4.3408 -9.3042 6.2853 21 1 -0.3633 0.8478 -0.5808 22 1 -0.3633 0.0791 1.0246 23 1 -0.3634 -0.9269 -0.4438 24 1 2.2752 1.7423 1.0247 25 1 3.1829 1.3084 -0.4437 26 1 1.5818 2.0738 -0.5808 27 1 1.6111 -1.8578 -1.2693 28 1 3.1715 -0.8747 -1.2686 29 1 0.6680 -1.6469 2.1451 30 1 0.7942 -2.7207 0.7311 31 1 3.1691 -2.9554 2.2414 32 1 3.2083 -5.5193 3.0713 33 1 3.0833 -4.4454 4.4853 34 1 0.9504 -5.5350 5.1254 35 1 1.0747 -6.6094 3.7117 36 1 0.2312 -8.8822 6.4832 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:47 Heat of formation + Delta-G solvation = -64.058124 kcal Electronic energy + Delta-G solvation = -14969.311783 eV Core-core repulsion = 12452.276286 eV Total energy + Delta-G solvation = -2517.035497 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80606 -39.48487 -35.65463 -35.38833 -33.02195 -30.56779 -28.80648 -28.14159 -26.66097 -23.54116 -22.17670 -21.25577 -19.62867 -18.72905 -17.38307 -17.23923 -16.67198 -16.43104 -15.63158 -15.17871 -14.96907 -14.57256 -14.49621 -14.11629 -13.85203 -13.36600 -13.23647 -13.08237 -12.86949 -12.80160 -12.47404 -12.31977 -11.95215 -11.91634 -11.63501 -11.30693 -10.95794 -10.91305 -10.56702 -10.40770 -10.01361 -8.17641 -6.31967 1.42546 1.45593 1.56567 1.70951 2.20761 2.44669 2.79035 3.15217 3.62925 3.81519 3.86249 4.08678 4.17816 4.25466 4.48107 4.55035 4.58662 4.70489 4.79425 4.83919 4.93524 5.03517 5.06047 5.08868 5.10116 5.21308 5.29290 5.46000 5.47849 5.54640 5.63287 5.85776 6.17860 6.62639 6.86620 7.35027 7.38559 8.95184 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.074257 B = 0.004018 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.980081 B = 6966.473992 C = 7180.715592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C -0.113 4.113 4 C -0.163 4.163 5 C -0.164 4.164 6 H 0.126 0.874 7 C 0.152 3.848 8 N -0.716 5.716 9 C 0.508 3.492 10 O -0.593 6.593 11 C -0.119 4.119 12 C 0.041 3.959 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.938 5.938 17 Si 0.976 3.024 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.255 1.255 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.417 0.583 32 H 0.105 0.895 33 H 0.105 0.895 34 H -0.018 1.018 35 H -0.018 1.018 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 18.074 -12.885 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.119 4.119 3 C -0.170 4.170 4 C -0.200 4.200 5 C -0.182 4.182 6 H 0.144 0.856 7 C 0.029 3.971 8 N -0.369 5.369 9 C 0.297 3.703 10 O -0.473 6.473 11 C -0.158 4.158 12 C 0.003 3.997 13 C -0.581 4.581 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.178 1.178 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.689 17.893 -12.840 23.016 hybrid contribution 0.133 -0.848 0.621 1.059 sum 6.822 17.045 -12.219 22.054 Atomic orbital electron populations 1.21417 0.92345 1.02358 1.01902 1.21717 0.94917 0.91960 1.03326 1.21375 1.00396 0.92886 1.02326 1.23437 1.02995 1.00841 0.92725 1.22550 1.01460 0.99374 0.94804 0.85639 1.20784 0.92764 0.89717 0.93853 1.45912 1.11493 1.30324 1.49220 1.21394 0.88681 0.81365 0.78872 1.90648 1.17850 1.73734 1.65044 1.21637 0.98497 0.96284 0.99415 1.18702 0.94210 0.92899 0.93890 1.21724 0.94311 1.13138 1.28945 0.90505 1.26168 0.96401 0.99928 0.98087 1.70181 1.11994 1.32990 1.42690 0.85291 0.78820 0.77215 0.78729 1.19676 1.21206 1.17830 0.90604 0.92782 0.93068 0.92078 0.91440 0.91209 0.89282 0.86931 0.92919 0.93167 0.74580 0.87679 0.87639 0.99997 1.00005 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.86 71.98 0.64 -1.43 16 2 C -0.12 -1.84 2.70 -52.18 -0.14 -1.98 16 3 C -0.11 -1.32 9.85 71.98 0.71 -0.61 16 4 C -0.16 -2.50 9.47 30.62 0.29 -2.21 16 5 C -0.16 -2.87 5.57 -10.77 -0.06 -2.93 16 6 H 0.13 1.82 8.04 -2.39 -0.02 1.80 16 7 C 0.15 3.94 5.04 86.38 0.44 4.37 16 8 N -0.72 -20.09 5.56 -463.05 -2.57 -22.66 16 9 C 0.51 20.37 7.83 87.66 0.69 21.06 16 10 O -0.59 -30.26 15.98 -3.01 -0.05 -30.30 16 11 C -0.12 -4.85 5.64 29.85 0.17 -4.69 16 12 C 0.04 2.31 4.26 29.85 0.13 2.44 16 13 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 16 N -0.94 -60.32 13.29 21.45 0.28 -60.03 16 17 Si 0.98 44.65 29.54 68.60 2.03 46.67 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.25 -10.77 7.11 99.48 0.71 -10.07 16 21 H 0.08 1.02 7.93 -2.39 -0.02 1.00 16 22 H 0.05 1.00 7.84 -2.39 -0.02 0.98 16 23 H 0.05 0.94 7.90 -2.38 -0.02 0.92 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.66 7.90 -2.39 -0.02 0.64 16 26 H 0.07 0.71 7.93 -2.39 -0.02 0.69 16 27 H 0.09 1.51 7.94 -2.39 -0.02 1.49 16 28 H 0.11 1.34 8.05 -2.39 -0.02 1.32 16 29 H 0.05 1.53 7.77 -2.39 -0.02 1.51 16 30 H 0.05 1.45 7.88 -2.39 -0.02 1.43 16 31 H 0.42 8.43 8.40 -92.71 -0.78 7.65 16 32 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 35 H -0.02 -1.19 8.10 -2.38 -0.02 -1.21 16 36 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -76.30 303.71 3.50 -72.80 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.26 Total: 10.63 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 3.55 Total: -17.11 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.29 Total: -82.69 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.30 3.50 -72.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.745 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds