Wall clock time and date at job start Sun Mar 29 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 110.54187 * 2 1 4 4 C 1.46899 * 110.99505 * 57.38718 * 3 2 1 5 5 C 1.50703 * 109.46952 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99800 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00227 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00069 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99751 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46850 * 90.00066 * 9 7 5 11 11 H 1.48497 * 109.47249 * 209.99888 * 9 7 5 12 12 H 1.48492 * 109.47382 * 330.00438 * 9 7 5 13 13 C 1.54813 * 110.48582 * 122.62030 * 2 1 3 14 14 C 1.54996 * 102.09187 * 139.55539 * 13 2 1 15 15 O 1.44379 * 103.49106 * 322.97689 * 14 13 2 16 16 C 1.43740 * 106.97809 * 40.06171 * 15 14 13 17 17 H 1.08993 * 109.88066 * 92.91273 * 16 15 14 18 18 C 1.52999 * 109.87991 * 213.91702 * 16 15 14 19 19 C 1.53004 * 117.50128 * 10.53957 * 18 16 15 20 20 C 1.53008 * 117.49527 * 301.88144 * 18 16 15 21 21 H 1.08999 * 109.46923 * 175.73374 * 1 2 3 22 22 H 1.09000 * 109.46906 * 295.73698 * 1 2 3 23 23 H 1.08999 * 109.46900 * 55.73642 * 1 2 3 24 24 H 1.00893 * 111.00219 * 293.43258 * 3 2 1 25 25 H 1.09005 * 109.47230 * 299.99417 * 4 3 2 26 26 H 1.08999 * 109.47581 * 59.99657 * 4 3 2 27 27 H 0.97001 * 119.99888 * 180.02562 * 8 7 5 28 28 H 1.08997 * 110.91064 * 21.36013 * 13 2 1 29 29 H 1.08995 * 110.93566 * 257.76352 * 13 2 1 30 30 H 1.08995 * 110.62020 * 204.47546 * 14 13 2 31 31 H 1.09004 * 110.61866 * 81.47243 * 14 13 2 32 32 H 1.09001 * 115.55289 * 156.21637 * 18 16 15 33 33 H 1.09004 * 117.49348 * 0.02562 * 19 18 16 34 34 H 1.08996 * 117.49852 * 145.02493 * 19 18 16 35 35 H 1.09006 * 117.49544 * 214.97618 * 20 18 16 36 36 H 1.08992 * 117.49978 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0455 1.3756 0.0000 4 6 1.5380 2.1278 1.1552 5 6 2.0874 3.5307 1.1218 6 1 2.7471 3.8334 0.3221 7 6 1.7469 4.4283 2.1115 8 7 2.2259 5.6527 2.0820 9 14 0.6040 3.9054 3.4935 10 1 1.4047 3.3523 4.6153 11 1 -0.1679 5.0814 3.9691 12 1 -0.3329 2.8669 2.9949 13 6 2.0719 -0.7818 1.2215 14 6 3.2659 -1.5562 0.6077 15 8 2.7955 -1.9110 -0.7104 16 6 2.0695 -0.7781 -1.2160 17 1 2.7351 -0.1410 -1.7981 18 6 0.9075 -1.2530 -2.0907 19 6 0.5734 -2.7460 -2.0721 20 6 1.2452 -2.1269 -3.3004 21 1 -0.3633 -1.0248 -0.0764 22 1 -0.3633 0.4463 0.9257 23 1 -0.3633 0.5786 -0.8493 24 1 1.8216 1.8456 -0.8642 25 1 0.4492 2.1626 1.1163 26 1 1.8532 1.6364 2.0757 27 1 1.9867 6.2840 2.7785 28 1 1.3197 -1.4695 1.6080 29 1 2.4103 -0.0998 2.0015 30 1 3.4839 -2.4507 1.1910 31 1 4.1456 -0.9159 0.5417 32 1 0.0781 -0.5529 -2.1915 33 1 1.1813 -3.3898 -1.4363 34 1 -0.4756 -3.0281 -2.1610 35 1 0.6377 -2.0020 -4.1968 36 1 2.2951 -2.3631 -3.4732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591026543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:28 Heat of formation + Delta-G solvation = -35.238467 kcal Electronic energy + Delta-G solvation = -16306.077801 eV Core-core repulsion = 13790.292019 eV Total energy + Delta-G solvation = -2515.785783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30634 -37.51457 -36.98234 -34.75585 -32.16775 -30.70783 -28.57338 -27.44233 -24.26400 -23.67476 -23.14180 -21.28135 -20.07470 -19.11270 -17.43449 -17.14248 -16.72716 -16.28185 -15.59333 -15.52507 -15.21757 -14.74597 -14.55841 -14.16927 -13.76441 -13.34102 -13.17256 -12.88833 -12.57303 -12.33841 -12.29179 -12.10361 -11.90692 -11.80818 -11.58765 -11.39906 -11.09383 -10.90952 -10.80812 -10.47310 -9.15721 -8.31071 -6.34983 1.33423 1.34582 1.45399 2.32315 2.84635 2.96379 3.03388 3.35844 3.55178 3.79368 3.99216 4.07739 4.13684 4.23037 4.36062 4.45055 4.58653 4.67715 4.75398 4.85527 4.86545 4.90621 4.94795 5.02563 5.05783 5.08307 5.12573 5.26385 5.32167 5.40721 5.54773 5.83245 6.04341 6.52988 6.65395 6.75708 7.29616 8.85838 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042353 B = 0.007008 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.954068 B = 3994.271519 C = 4057.890177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.080 3.920 3 N -0.675 5.675 4 C 0.178 3.822 5 C -0.528 4.528 6 H 0.035 0.965 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.248 1.248 13 C -0.147 4.147 14 C 0.055 3.945 15 O -0.380 6.380 16 C 0.122 3.878 17 H 0.062 0.938 18 C -0.170 4.170 19 C -0.158 4.158 20 C -0.172 4.172 21 H 0.081 0.919 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.337 0.663 25 H -0.006 1.006 26 H 0.026 0.974 27 H 0.267 0.733 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 -17.642 -4.914 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.306 5.306 4 C 0.050 3.950 5 C -0.566 4.566 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.771 3.229 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.172 1.172 13 C -0.184 4.184 14 C -0.021 4.021 15 O -0.299 6.299 16 C 0.064 3.936 17 H 0.079 0.921 18 C -0.188 4.188 19 C -0.195 4.195 20 C -0.209 4.209 21 H 0.100 0.900 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.155 0.845 25 H 0.011 0.989 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.421 -17.851 -4.632 18.965 hybrid contribution -0.965 1.060 0.508 1.521 sum -5.387 -16.791 -4.123 18.110 Atomic orbital electron populations 1.22489 0.95491 1.02910 1.01416 1.22314 0.93692 0.89790 0.95332 1.60583 1.62533 1.01514 1.05950 1.19747 0.92831 0.91525 0.90892 1.21368 1.28839 0.96067 1.10317 0.94641 1.25857 0.97705 0.94584 1.00732 1.70056 1.46813 1.06160 1.35843 0.85707 0.79486 0.78507 0.79217 1.19070 1.20737 1.17205 1.23242 0.98801 0.98884 0.97514 1.23509 0.95783 0.99774 0.83022 1.88761 1.71862 1.37153 1.32097 1.22082 0.91963 0.86510 0.93083 0.92053 1.22589 0.99731 0.95618 1.00911 1.22890 1.01592 0.94179 1.00869 1.22999 1.01643 1.03706 0.92592 0.89978 0.93704 0.92145 0.84530 0.98865 0.95650 0.92390 0.89158 0.90998 0.86896 0.92974 0.85976 0.88754 0.87662 0.87447 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 6.68 71.98 0.48 -4.18 16 2 C 0.08 2.54 0.88 4.52 0.00 2.55 16 3 N -0.67 -27.06 6.02 -469.22 -2.83 -29.89 16 4 C 0.18 8.32 3.83 85.56 0.33 8.65 16 5 C -0.53 -30.48 9.87 25.60 0.25 -30.23 16 6 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 7 C 0.01 0.50 5.47 84.65 0.46 0.97 16 8 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 9 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 13 C -0.15 -4.34 6.17 31.90 0.20 -4.14 16 14 C 0.06 1.50 7.72 72.67 0.56 2.06 16 15 O -0.38 -10.95 9.58 -148.98 -1.43 -12.38 16 16 C 0.12 3.52 3.54 30.97 0.11 3.63 16 17 H 0.06 1.97 7.93 -2.39 -0.02 1.95 16 18 C -0.17 -4.02 4.18 -10.79 -0.05 -4.06 16 19 C -0.16 -3.24 9.76 30.62 0.30 -2.94 16 20 C -0.17 -3.56 10.18 30.62 0.31 -3.25 16 21 H 0.08 1.97 7.14 -2.39 -0.02 1.95 16 22 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 23 H 0.06 1.65 6.92 -2.39 -0.02 1.63 16 24 H 0.34 13.44 8.75 -89.70 -0.78 12.65 16 25 H -0.01 -0.29 5.50 -2.38 -0.01 -0.30 16 26 H 0.03 1.19 5.76 -2.39 -0.01 1.17 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.09 2.30 7.87 -2.39 -0.02 2.28 16 29 H 0.07 2.41 6.21 -2.39 -0.01 2.40 16 30 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.12 2.75 6.06 -2.39 -0.01 2.73 16 33 H 0.09 2.12 7.10 -2.38 -0.02 2.11 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.50 279.09 1.12 -63.38 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.23 Total: 23.34 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.96 Total: -30.95 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.53 Total: -88.98 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.43 Total: -12.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -64.50 1.12 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591026543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.140 kcal (2) G-P(sol) polarization free energy of solvation -64.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds