Wall clock time and date at job start Sun Mar 29 2020 21:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40505 * 127.47194 * 2 1 4 4 H 0.97004 * 125.99301 * 0.02911 * 3 2 1 5 5 N 1.28614 * 108.00622 * 180.31295 * 3 2 1 6 6 N 1.28390 * 111.43977 * 359.73813 * 5 3 2 7 7 C 1.36476 * 109.65507 * 0.02562 * 6 5 3 8 8 N 1.30574 * 127.07972 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 120.00521 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 H 1.09003 * 109.46823 * 270.11461 * 1 2 3 22 22 H 1.08998 * 109.46894 * 30.11712 * 1 2 3 23 23 H 1.09000 * 109.46992 * 150.11757 * 1 2 3 24 24 H 1.09002 * 109.47391 * 0.02562 * 9 8 7 25 25 H 1.09001 * 109.46813 * 240.00247 * 9 8 7 26 26 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 27 27 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 28 28 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 29 29 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 30 30 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 31 31 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 32 32 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3198 1.1151 0.0000 4 1 2.0437 2.0450 0.0004 5 7 3.5324 0.6865 -0.0067 6 7 3.5767 -0.5966 -0.0057 7 6 2.3080 -1.0997 0.0017 8 7 1.9602 -2.3582 0.0052 9 6 2.9880 -3.4022 0.0019 10 6 2.8377 -4.2698 1.2531 11 6 2.9999 -3.3985 2.5004 12 6 1.4520 -4.9183 1.2607 13 6 3.8954 -5.3433 1.2499 14 1 4.6036 -5.4012 0.4366 15 6 3.9589 -6.2515 2.2854 16 7 3.0968 -6.1807 3.2760 17 14 5.2694 -7.5827 2.2811 18 1 6.4843 -7.0834 2.9742 19 1 4.7563 -8.7847 2.9860 20 1 5.6096 -7.9379 0.8799 21 1 -0.3633 0.0021 1.0277 22 1 -0.3633 0.8889 -0.5156 23 1 -0.3633 -0.8910 -0.5120 24 1 3.9752 -2.9402 -0.0031 25 1 2.8724 -4.0229 -0.8867 26 1 2.2352 -2.6218 2.5029 27 1 2.8933 -4.0166 3.3918 28 1 3.9871 -2.9364 2.4949 29 1 1.3364 -5.5390 0.3722 30 1 1.3452 -5.5368 2.1519 31 1 0.6874 -4.1415 1.2632 32 1 3.1417 -6.8194 4.0047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591176592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:24 Heat of formation + Delta-G solvation = 133.938498 kcal Electronic energy + Delta-G solvation = -15783.800272 eV Core-core repulsion = 13204.102961 eV Total energy + Delta-G solvation = -2579.697311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.54553 -38.33339 -36.03594 -35.45518 -33.46460 -31.75608 -28.64119 -27.50197 -27.24985 -26.31849 -24.82838 -22.39661 -20.57231 -19.37061 -17.94140 -17.57989 -17.32653 -16.62991 -16.20211 -15.09482 -14.58445 -14.55276 -14.28733 -14.02277 -13.38812 -13.36925 -13.10174 -12.77876 -12.57185 -12.51150 -12.36393 -12.10179 -12.06646 -11.55983 -11.34438 -11.10286 -10.74295 -10.34374 -10.01789 -8.51349 -7.93433 -6.11965 -0.06167 0.24722 1.45070 1.45511 1.55904 1.94279 2.49123 2.66998 3.26825 3.53212 3.75345 3.99349 4.48925 4.64290 4.70687 4.77398 4.86160 4.87620 5.10727 5.21626 5.24857 5.37191 5.46154 5.54744 5.70423 5.74189 6.19777 6.26806 6.32809 6.52912 6.93055 7.05444 7.35370 7.55081 9.04494 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.048844 B = 0.006898 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.118999 B = 4058.128276 C = 4311.762732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.454 5.454 3 N -0.286 5.286 4 H 0.493 0.507 5 N 0.100 4.900 6 N -0.374 5.374 7 C 0.459 3.541 8 N -0.572 5.572 9 C 0.103 3.897 10 C 0.067 3.933 11 C -0.100 4.100 12 C -0.103 4.103 13 C -0.527 4.527 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.907 5.907 17 Si 0.950 3.050 18 H -0.279 1.279 19 H -0.281 1.281 20 H -0.271 1.271 21 H 0.075 0.925 22 H 0.124 0.876 23 H 0.091 0.909 24 H 0.027 0.973 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.056 0.944 28 H 0.006 0.994 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 16.740 -5.848 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.275 5.275 3 N -0.142 5.142 4 H 0.354 0.646 5 N 0.103 4.897 6 N -0.273 5.273 7 C 0.091 3.909 8 N -0.312 5.312 9 C -0.028 4.028 10 C 0.066 3.934 11 C -0.158 4.158 12 C -0.160 4.160 13 C -0.566 4.566 14 H 0.064 0.936 15 C -0.178 4.178 16 N -0.547 5.547 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.207 1.207 20 H -0.196 1.196 21 H 0.094 0.906 22 H 0.143 0.857 23 H 0.110 0.890 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.189 16.274 -5.692 18.318 hybrid contribution 0.337 -0.315 0.201 0.503 sum -5.852 15.959 -5.491 17.863 Atomic orbital electron populations 1.22159 0.68953 1.06267 1.04317 1.48561 1.05071 0.96482 1.77345 1.48022 0.97989 1.05408 1.62769 0.64590 1.77494 1.02055 1.08571 1.01609 1.77070 1.20405 0.98950 1.30828 1.21893 0.82841 0.90110 0.96098 1.72250 1.33810 0.94864 1.30315 1.21677 0.91224 0.91332 0.98520 1.18129 0.93716 0.91571 0.90007 1.21452 0.95671 0.96914 1.01722 1.21439 0.96697 0.98353 0.99550 1.21441 1.14818 1.13588 1.06744 0.93558 1.25587 0.97693 0.99348 0.95127 1.69977 1.36896 1.37157 1.10625 0.85682 0.79546 0.78999 0.78138 1.20461 1.20693 1.19561 0.90645 0.85750 0.89035 0.95430 0.93148 0.97035 0.92524 0.97509 0.96622 0.93006 0.95363 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.81 11.60 127.77 1.48 3.29 16 2 N -0.45 -10.97 4.19 -370.64 -1.55 -12.52 16 3 N -0.29 -5.05 8.31 37.02 0.31 -4.75 16 4 H 0.49 2.56 8.96 -340.26 -3.05 -0.49 16 5 N 0.10 2.69 13.30 37.02 0.49 3.18 16 6 N -0.37 -14.00 11.41 -58.39 -0.67 -14.67 16 7 C 0.46 17.02 8.69 260.39 2.26 19.28 16 8 N -0.57 -24.87 9.07 -349.11 -3.17 -28.04 16 9 C 0.10 5.11 5.22 86.38 0.45 5.56 16 10 C 0.07 3.64 0.57 -52.93 -0.03 3.61 16 11 C -0.10 -5.45 8.09 71.98 0.58 -4.87 16 12 C -0.10 -5.48 8.09 71.98 0.58 -4.89 16 13 C -0.53 -30.91 8.01 25.60 0.21 -30.70 16 14 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 15 C 0.02 1.21 5.15 84.66 0.44 1.64 16 16 N -0.91 -53.42 9.35 21.45 0.20 -53.22 16 17 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.03 1.41 7.07 -2.39 -0.02 1.39 16 25 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.01 0.56 7.60 -2.39 -0.02 0.54 16 27 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 2.97 6.07 -2.38 -0.01 2.96 16 31 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.76 270.19 1.69 -74.07 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -1.92 Total: -4.48 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.97 Total: -7.07 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.38 Total: -110.01 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.76 1.69 -74.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591176592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.006 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds