Wall clock time and date at job start Sun Mar 29 2020 21:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99654 * 2 1 4 4 H 1.48500 * 109.47232 * 264.59270 * 3 2 1 5 5 H 1.48494 * 109.47239 * 24.59701 * 3 2 1 6 6 H 1.48506 * 109.46980 * 144.59328 * 3 2 1 7 7 C 1.37873 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 7.41059 * 7 2 1 9 9 C 1.50698 * 120.00096 * 187.12907 * 7 2 1 10 10 O 1.42893 * 110.29041 * 307.48891 * 9 7 2 11 11 C 1.54268 * 110.32280 * 185.36068 * 9 7 2 12 12 C 1.54371 * 105.05944 * 241.10725 * 11 9 7 13 13 N 1.48557 * 104.59863 * 23.85486 * 12 11 9 14 14 C 1.46902 * 111.00042 * 200.96122 * 13 12 11 15 15 C 1.52999 * 109.46958 * 290.12113 * 14 13 12 16 16 C 1.53002 * 109.47451 * 180.02562 * 15 14 13 17 17 C 1.52999 * 117.49958 * 243.62798 * 16 15 14 18 18 C 1.52996 * 117.50462 * 175.00154 * 16 15 14 19 19 C 1.48556 * 104.22027 * 320.51509 * 13 12 11 20 20 H 0.97000 * 120.00142 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00562 * 305.00814 * 10 9 7 22 22 H 1.09002 * 110.32166 * 0.02562 * 11 9 7 23 23 H 1.08999 * 110.32173 * 122.21084 * 11 9 7 24 24 H 1.09002 * 110.41075 * 142.63218 * 12 11 9 25 25 H 1.09000 * 110.41419 * 264.95626 * 12 11 9 26 26 H 1.08995 * 109.47359 * 50.12084 * 14 13 12 27 27 H 1.09002 * 109.46818 * 170.12817 * 14 13 12 28 28 H 1.08996 * 109.47568 * 300.00286 * 15 14 13 29 29 H 1.09007 * 109.47280 * 60.00166 * 15 14 13 30 30 H 1.09005 * 115.54743 * 29.33238 * 16 15 14 31 31 H 1.08996 * 117.49854 * 359.97438 * 17 16 15 32 32 H 1.09002 * 117.49576 * 145.01939 * 17 16 15 33 33 H 1.08993 * 117.50363 * 214.98394 * 18 16 15 34 34 H 1.09005 * 117.49266 * 359.97438 * 18 16 15 35 35 H 1.09000 * 110.41118 * 280.70140 * 19 13 12 36 36 H 1.08999 * 110.41405 * 158.26129 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6108 1.9806 -1.3938 5 1 1.3941 2.6830 0.5827 6 1 3.4849 1.4760 0.8112 7 6 2.0046 -1.1940 0.0005 8 1 1.4713 -2.1254 -0.1197 9 6 3.5028 -1.1989 0.1625 10 8 4.1070 -0.3208 -0.7893 11 6 4.0549 -2.6299 -0.0028 12 6 4.7274 -2.9587 1.3473 13 7 4.0551 -2.0674 2.3274 14 6 4.8816 -1.8873 3.5284 15 6 4.9219 -3.1956 4.3207 16 6 5.7822 -3.0079 5.5720 17 6 7.0602 -3.8418 5.6823 18 6 5.8528 -4.1722 6.5620 19 6 3.8882 -0.7837 1.5986 20 1 -0.4850 0.8400 -0.0004 21 1 3.8647 -0.5081 -1.7065 22 1 3.2422 -3.3286 -0.2015 23 1 4.7881 -2.6620 -0.8087 24 1 4.5632 -4.0040 1.6091 25 1 5.7947 -2.7419 1.3033 26 1 5.8937 -1.6091 3.2347 27 1 4.4539 -1.0998 4.1490 28 1 3.9098 -3.4738 4.6144 29 1 5.3496 -3.9831 3.7001 30 1 5.8032 -1.9976 5.9808 31 1 7.2879 -4.5245 4.8636 32 1 7.9223 -3.3802 6.1637 33 1 5.9205 -3.9280 7.6221 34 1 5.2859 -5.0718 6.3221 35 1 4.8238 -0.2245 1.5946 36 1 3.0922 -0.1912 2.0496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:29 Heat of formation + Delta-G solvation = -44.578672 kcal Electronic energy + Delta-G solvation = -15996.572572 eV Core-core repulsion = 13480.381767 eV Total energy + Delta-G solvation = -2516.190804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36461 -38.51725 -36.82989 -34.44378 -32.99823 -30.10008 -29.59797 -26.29693 -24.28319 -23.19744 -22.01898 -21.58664 -20.91811 -19.15831 -17.23539 -17.11743 -16.70414 -16.06697 -15.69859 -15.49166 -14.90853 -14.80208 -14.24240 -14.09648 -13.73811 -13.57813 -13.08134 -12.78975 -12.48005 -12.34083 -12.24003 -12.18708 -11.97615 -11.89383 -11.60587 -11.10870 -10.93349 -10.80227 -10.71686 -10.29973 -9.34377 -8.32666 -6.43411 1.43307 1.44566 1.64940 2.40649 2.86548 2.96295 3.09629 3.70666 3.80088 3.95260 4.06361 4.09004 4.21626 4.30164 4.35641 4.41553 4.48096 4.63285 4.71769 4.80057 4.81701 4.92167 5.06219 5.06742 5.07800 5.19339 5.26998 5.30431 5.39247 5.42920 5.60967 5.94765 6.11984 6.22883 6.66081 7.11293 7.34321 8.81577 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040252 B = 0.006725 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.445236 B = 4162.296090 C = 4309.234467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.321 1.321 6 H -0.251 1.251 7 C -0.534 4.534 8 H 0.037 0.963 9 C 0.212 3.788 10 O -0.581 6.581 11 C -0.136 4.136 12 C 0.043 3.957 13 N -0.519 5.519 14 C 0.049 3.951 15 C -0.073 4.073 16 C -0.164 4.164 17 C -0.177 4.177 18 C -0.177 4.177 19 C 0.061 3.939 20 H 0.265 0.735 21 H 0.381 0.619 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -5.851 8.293 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.252 1.252 6 H -0.176 1.176 7 C -0.572 4.572 8 H 0.056 0.944 9 C 0.172 3.828 10 O -0.390 6.390 11 C -0.174 4.174 12 C -0.084 4.084 13 N -0.244 5.244 14 C -0.080 4.080 15 C -0.111 4.111 16 C -0.182 4.182 17 C -0.214 4.214 18 C -0.214 4.214 19 C -0.067 4.067 20 H 0.074 0.926 21 H 0.230 0.770 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.107 -5.742 9.013 17.697 hybrid contribution 0.070 0.966 -0.879 1.308 sum 14.177 -4.776 8.134 17.028 Atomic orbital electron populations 1.70097 1.08352 1.28189 1.51113 1.25809 0.95210 1.03251 0.92944 0.85366 0.77752 0.77235 0.79056 1.20303 1.25163 1.17588 1.21576 0.91690 0.93236 1.50661 0.94437 1.19792 0.90036 0.86990 0.86019 1.86188 1.73119 1.59630 1.20041 1.22875 0.99652 0.97330 0.97561 1.23036 0.95938 0.98194 0.91268 1.65296 1.44413 1.09294 1.05393 1.22304 0.94920 0.98871 0.91863 1.21005 0.99586 0.96232 0.94249 1.22258 1.00581 0.97067 0.98316 1.23107 0.92122 1.03180 1.02960 1.23024 1.01961 0.99252 0.97124 1.23044 0.98172 0.91381 0.94122 0.92586 0.76996 0.92316 0.89980 0.89427 0.93058 0.94318 0.91533 0.91936 0.91531 0.87784 0.88685 0.87971 0.87851 0.88735 0.94881 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 2 C 0.03 1.58 5.29 84.65 0.45 2.03 16 3 Si 0.98 48.21 24.50 68.60 1.68 49.89 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.32 -16.10 7.11 99.48 0.71 -15.40 16 6 H -0.25 -11.93 5.48 99.48 0.54 -11.38 16 7 C -0.53 -30.09 8.71 25.60 0.22 -29.87 16 8 H 0.04 2.36 7.62 -2.91 -0.02 2.34 16 9 C 0.21 9.70 0.91 -10.64 -0.01 9.69 16 10 O -0.58 -25.05 9.56 -148.98 -1.42 -26.48 16 11 C -0.14 -5.21 6.44 31.49 0.20 -5.01 16 12 C 0.04 1.44 5.73 86.45 0.50 1.94 16 13 N -0.52 -19.82 5.37 -881.53 -4.73 -24.56 16 14 C 0.05 1.48 4.77 86.30 0.41 1.89 16 15 C -0.07 -1.84 5.55 30.59 0.17 -1.67 16 16 C -0.16 -3.37 5.74 -10.79 -0.06 -3.43 16 17 C -0.18 -3.03 10.18 30.59 0.31 -2.72 16 18 C -0.18 -3.07 10.25 30.59 0.31 -2.75 16 19 C 0.06 2.70 4.02 86.45 0.35 3.05 16 20 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 21 H 0.38 14.31 9.04 -74.06 -0.67 13.64 16 22 H 0.06 2.40 7.43 -2.39 -0.02 2.38 16 23 H 0.08 2.72 7.98 -2.39 -0.02 2.70 16 24 H 0.09 2.61 7.76 -2.39 -0.02 2.59 16 25 H 0.05 1.53 7.83 -2.39 -0.02 1.51 16 26 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16 27 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.60 6.99 -2.38 -0.02 1.58 16 30 H 0.10 2.11 8.08 -2.38 -0.02 2.09 16 31 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.03 1.40 7.91 -2.39 -0.02 1.38 16 36 H 0.06 2.74 6.33 -2.39 -0.02 2.73 16 Total: -1.00 -65.78 282.56 -1.11 -66.89 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.22 Total: 19.68 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.85 Total: -26.86 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -4.44 Total: -83.12 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.42 Total: -26.48 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.68 Total: 49.89 kcal Total: -65.78 -1.11 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.309 kcal (2) G-P(sol) polarization free energy of solvation -65.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds