Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48496 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46966 * 300.00001 * 3 2 1 6 6 H 1.48500 * 109.47091 * 60.00041 * 3 2 1 7 7 C 1.37878 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00274 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.26837 * 300.69937 * 9 7 2 11 11 C 1.54593 * 110.31158 * 62.78349 * 9 7 2 12 12 C 1.55107 * 102.84089 * 97.11816 * 11 9 7 13 13 N 1.48530 * 103.28249 * 37.30679 * 12 11 9 14 14 C 1.46906 * 111.00065 * 200.32826 * 13 12 11 15 15 C 1.52998 * 109.47299 * 307.40140 * 14 13 12 16 16 C 1.53778 * 113.61294 * 274.13588 * 15 14 13 17 17 C 1.53953 * 87.01963 * 220.04757 * 16 15 14 18 18 C 1.53775 * 113.61612 * 176.52881 * 15 14 13 19 19 C 1.47903 * 105.82350 * 320.84560 * 13 12 11 20 20 H 0.97006 * 120.00278 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00311 * 59.30176 * 10 9 7 22 22 H 1.08992 * 110.72593 * 215.41513 * 11 9 7 23 23 H 1.08998 * 110.72143 * 338.70849 * 11 9 7 24 24 H 1.09002 * 110.59609 * 278.87572 * 12 11 9 25 25 H 1.09003 * 110.82856 * 155.84995 * 12 11 9 26 26 H 1.08997 * 109.46711 * 67.40025 * 14 13 12 27 27 H 1.08998 * 109.47245 * 187.39933 * 14 13 12 28 28 H 1.09003 * 112.84687 * 45.32636 * 15 14 13 29 29 H 1.09000 * 113.61519 * 334.56302 * 16 15 14 30 30 H 1.09004 * 113.61685 * 105.46794 * 16 15 14 31 31 H 1.09004 * 113.53226 * 270.80998 * 17 16 15 32 32 H 1.09001 * 113.74648 * 139.94603 * 17 16 15 33 33 H 1.09001 * 113.61031 * 254.52875 * 18 15 14 34 34 H 1.08996 * 113.61658 * 25.34319 * 18 15 14 35 35 H 1.08996 * 109.91370 * 265.97968 * 19 13 12 36 36 H 1.08997 * 110.08215 * 144.77642 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4103 -2.5855 1.1529 11 6 0.4090 -2.6327 -1.2890 12 6 1.3150 -3.4969 -2.2045 13 7 1.9380 -4.4580 -1.2588 14 6 3.1640 -5.0352 -1.8261 15 6 2.8630 -5.6115 -3.2110 16 6 2.3315 -7.0540 -3.1757 17 6 3.2104 -7.3228 -4.4108 18 6 4.1036 -6.1671 -3.9300 19 6 2.2341 -3.6839 -0.0338 20 1 -0.4851 0.8401 -0.0004 21 1 -0.2442 -1.8765 1.2163 22 1 -0.5316 -3.1439 -1.0844 23 1 0.2286 -1.6545 -1.7349 24 1 2.0758 -2.8803 -2.6832 25 1 0.7214 -4.0229 -2.9522 26 1 3.9245 -4.2591 -1.9129 27 1 3.5277 -5.8288 -1.1735 28 1 2.2647 -4.9407 -3.8277 29 1 2.6395 -7.6113 -2.2910 30 1 1.2624 -7.1305 -3.3743 31 1 2.7062 -7.1211 -5.3559 32 1 3.7057 -8.2936 -4.3941 33 1 4.4631 -5.5284 -4.7368 34 1 4.8976 -6.4800 -3.2521 35 1 3.2592 -3.3149 -0.0665 36 1 2.0928 -4.3094 0.8476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = -32.746473 kcal Electronic energy + Delta-G solvation = -16204.800684 eV Core-core repulsion = 13689.122963 eV Total energy + Delta-G solvation = -2515.677722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16863 -37.64729 -34.59110 -32.11068 -30.23379 -27.98909 -26.67278 -25.46441 -24.26674 -22.42367 -20.28627 -19.40829 -18.80470 -17.02551 -15.69861 -15.28789 -14.91324 -14.60296 -14.13026 -13.71667 -13.12741 -12.91546 -12.42113 -12.32739 -12.04926 -11.65347 -11.49870 -11.16766 -11.06310 -10.83877 -10.49469 -10.46266 -10.30005 -10.22742 -10.07145 -9.92890 -9.87127 -9.10003 -8.58178 -8.06580 -7.62116 -6.19908 -4.29576 3.20384 3.29186 3.33224 4.29393 4.54204 4.77461 4.85248 4.93443 5.07064 5.19549 5.56059 5.64612 5.79909 5.84708 5.88933 5.91335 5.97431 6.06704 6.10041 6.17834 6.25035 6.31310 6.44516 6.48926 6.67274 6.79368 7.04382 7.12517 7.42379 7.56594 7.60996 7.80196 7.85943 8.24472 8.74101 9.39511 9.58948 10.85741 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042367 B = 0.006870 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.735249 B = 4074.897846 C = 4334.430062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.245 3.755 10 O -0.590 6.590 11 C -0.128 4.128 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.057 3.943 15 C -0.109 4.109 16 C -0.125 4.125 17 C -0.145 4.145 18 C -0.138 4.138 19 C 0.052 3.948 20 H 0.267 0.733 21 H 0.381 0.619 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -8.808 -6.899 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.205 3.795 10 O -0.399 6.399 11 C -0.167 4.167 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.163 4.163 17 C -0.182 4.182 18 C -0.176 4.176 19 C -0.076 4.076 20 H 0.077 0.923 21 H 0.231 0.769 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.314 -9.659 -6.661 12.501 hybrid contribution 0.727 2.166 -0.353 2.312 sum 5.041 -7.493 -7.014 11.435 Atomic orbital electron populations 1.69672 1.05891 1.27305 1.50619 1.25015 0.94990 0.99400 0.93917 0.86443 0.80117 0.83161 0.77719 1.19774 1.20867 1.20748 1.21807 0.93382 0.90897 1.51035 0.92325 1.19375 0.86650 0.90894 0.82588 1.86111 1.51944 1.54595 1.47228 1.23047 0.96908 0.98772 0.97963 1.23132 0.97337 0.92912 0.95285 1.64791 1.23065 1.31138 1.05042 1.22261 0.92053 0.98465 0.94403 1.22629 0.97239 0.96553 0.96334 1.22873 0.99462 0.96347 0.97601 1.22858 0.98606 0.98351 0.98394 1.22925 0.96899 0.97859 0.99899 1.22802 0.97940 0.94723 0.92094 0.92334 0.76893 0.93363 0.90017 0.94406 0.92024 0.95034 0.91432 0.89014 0.90265 0.91674 0.90591 0.91913 0.91871 0.90314 0.93994 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 10.38 55.43 0.58 -23.53 16 2 C 0.07 1.83 5.01 -17.82 -0.09 1.74 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.51 8.23 -34.44 -0.28 -14.79 16 8 H 0.06 1.60 7.34 -52.49 -0.39 1.22 16 9 C 0.25 6.29 0.99 -90.42 -0.09 6.20 16 10 O -0.59 -16.01 12.93 -35.23 -0.46 -16.47 16 11 C -0.13 -3.07 5.89 -24.78 -0.15 -3.22 16 12 C 0.04 0.84 5.19 -1.81 -0.01 0.83 16 13 N -0.52 -10.35 5.40 -230.34 -1.24 -11.59 16 14 C 0.06 0.94 4.85 -3.82 -0.02 0.92 16 15 C -0.11 -1.52 3.51 -89.81 -0.32 -1.84 16 16 C -0.13 -1.57 7.65 -25.83 -0.20 -1.77 16 17 C -0.14 -1.54 8.09 -25.83 -0.21 -1.75 16 18 C -0.14 -1.59 7.64 -25.92 -0.20 -1.79 16 19 C 0.05 1.19 6.17 -2.76 -0.02 1.17 16 20 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 21 H 0.38 10.39 7.18 45.56 0.33 10.71 16 22 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 23 H 0.08 2.10 6.64 -51.93 -0.34 1.76 16 24 H 0.04 0.78 8.02 -51.93 -0.42 0.37 16 25 H 0.06 1.14 7.36 -51.93 -0.38 0.75 16 26 H 0.03 0.54 7.81 -51.93 -0.41 0.14 16 27 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 28 H 0.09 1.35 6.32 -51.93 -0.33 1.03 16 29 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.04 0.95 6.81 -51.93 -0.35 0.59 16 36 H 0.07 1.56 7.96 -51.93 -0.41 1.14 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -27.49 281.09 -8.67 -36.16 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.19 Total: 9.72 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.57 Total: -14.30 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.67 Total: -35.12 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.46 Total: -16.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.49 -8.67 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.415 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds