Wall clock time and date at job start Sun Mar 29 2020 21:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99869 * 2 1 4 4 H 1.48504 * 109.46875 * 264.99098 * 3 2 1 5 5 H 1.48496 * 109.47652 * 24.99284 * 3 2 1 6 6 H 1.48499 * 109.46990 * 144.99458 * 3 2 1 7 7 C 1.37870 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99985 * 185.07378 * 7 2 1 9 9 C 1.50707 * 120.00382 * 5.06928 * 7 2 1 10 10 O 1.42900 * 110.28171 * 62.95406 * 9 7 2 11 11 C 1.54254 * 110.32549 * 300.82961 * 9 7 2 12 12 C 1.54382 * 105.05762 * 241.10235 * 11 9 7 13 13 N 1.48558 * 104.59592 * 23.85078 * 12 11 9 14 14 C 1.46897 * 110.99906 * 200.95931 * 13 12 11 15 15 C 1.52999 * 109.47188 * 176.00751 * 14 13 12 16 16 C 1.53775 * 113.61961 * 271.53181 * 15 14 13 17 17 C 1.53779 * 87.08320 * 220.01527 * 16 15 14 18 18 C 1.53779 * 113.61380 * 174.03009 * 15 14 13 19 19 C 1.48556 * 104.22266 * 320.51891 * 13 12 11 20 20 H 0.97006 * 119.99709 * 0.02562 * 1 2 3 21 21 H 0.96701 * 114.00476 * 305.22837 * 10 9 7 22 22 H 1.09006 * 110.32245 * 359.97438 * 11 9 7 23 23 H 1.08997 * 110.32479 * 122.09978 * 11 9 7 24 24 H 1.08996 * 110.41129 * 142.63508 * 12 11 9 25 25 H 1.08999 * 110.40965 * 264.95281 * 12 11 9 26 26 H 1.08994 * 109.47801 * 296.01656 * 14 13 12 27 27 H 1.09003 * 109.47127 * 56.01640 * 14 13 12 28 28 H 1.09009 * 112.84581 * 42.84290 * 15 14 13 29 29 H 1.08999 * 113.61560 * 334.56807 * 16 15 14 30 30 H 1.09005 * 113.61513 * 105.46772 * 16 15 14 31 31 H 1.09000 * 113.61680 * 270.88550 * 17 16 15 32 32 H 1.09000 * 113.68976 * 139.99097 * 17 16 15 33 33 H 1.09001 * 113.61723 * 254.53373 * 18 15 14 34 34 H 1.08996 * 113.61579 * 25.44371 * 18 15 14 35 35 H 1.09002 * 110.41300 * 280.70642 * 19 13 12 36 36 H 1.08998 * 110.41337 * 158.26295 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9852 -1.3948 5 1 1.3978 2.6809 0.5915 6 1 3.4898 1.4730 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0832 9 6 1.2554 -2.4967 -0.1142 10 8 0.5737 -2.5673 -1.3682 11 6 0.2533 -2.6428 1.0493 12 6 0.7017 -3.9103 1.8081 13 7 2.1426 -4.0549 1.4766 14 6 2.5970 -5.4348 1.6947 15 6 4.0547 -5.5680 1.2496 16 6 4.2146 -5.9311 -0.2361 17 6 5.3594 -6.8625 0.1957 18 6 4.6738 -6.9387 1.5701 19 6 2.2250 -3.6881 0.0394 20 1 -0.4850 0.8401 -0.0004 21 1 -0.0143 -1.8189 -1.5389 22 1 0.3035 -1.7725 1.7038 23 1 -0.7586 -2.7684 0.6640 24 1 0.5702 -3.7770 2.8819 25 1 0.1411 -4.7787 1.4623 26 1 2.5163 -5.6809 2.7534 27 1 1.9762 -6.1177 1.1146 28 1 4.6718 -4.7261 1.5636 29 1 3.3558 -6.4582 -0.6516 30 1 4.5411 -5.0966 -0.8568 31 1 6.3338 -6.3745 0.2202 32 1 5.3754 -7.8131 -0.3375 33 1 5.3711 -6.9178 2.4077 34 1 3.9406 -7.7414 1.6484 35 1 1.9042 -4.5221 -0.5849 36 1 3.2405 -3.3876 -0.2186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:15 Heat of formation + Delta-G solvation = -32.018475 kcal Electronic energy + Delta-G solvation = -16352.673027 eV Core-core repulsion = 13837.026873 eV Total energy + Delta-G solvation = -2515.646153 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20755 -37.57012 -34.60666 -32.09338 -30.29714 -27.93574 -26.57020 -25.34501 -24.55056 -22.08208 -20.20289 -19.23815 -19.11812 -16.96534 -15.83382 -14.92432 -14.88169 -14.70842 -14.21210 -13.76853 -13.14300 -12.70264 -12.28538 -12.24790 -12.04043 -11.58363 -11.46238 -11.32461 -11.16632 -10.85298 -10.56464 -10.42552 -10.32303 -10.18628 -10.02319 -9.80747 -9.75214 -8.89817 -8.55290 -8.06618 -7.71232 -6.10631 -4.17715 3.29225 3.35401 3.39606 4.39081 4.55706 4.79707 4.90314 4.99634 5.03977 5.20147 5.61343 5.72337 5.81855 5.84168 5.87112 5.92360 6.02346 6.07327 6.13991 6.20147 6.25022 6.32164 6.42902 6.51271 6.62889 6.72219 6.98685 7.17532 7.33026 7.68712 7.79949 7.81825 7.93330 8.26593 8.85310 9.45878 9.51943 10.94947 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.007717 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.647275 B = 3627.410045 C = 3921.140899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.244 3.756 10 O -0.595 6.595 11 C -0.117 4.117 12 C 0.030 3.970 13 N -0.500 5.500 14 C 0.055 3.945 15 C -0.103 4.103 16 C -0.138 4.138 17 C -0.143 4.143 18 C -0.136 4.136 19 C 0.059 3.941 20 H 0.264 0.736 21 H 0.379 0.621 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -9.963 2.327 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.204 3.796 10 O -0.403 6.403 11 C -0.156 4.156 12 C -0.098 4.098 13 N -0.225 5.225 14 C -0.074 4.074 15 C -0.121 4.121 16 C -0.175 4.175 17 C -0.180 4.180 18 C -0.174 4.174 19 C -0.068 4.068 20 H 0.074 0.926 21 H 0.228 0.772 22 H 0.097 0.903 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.532 -10.064 2.622 11.780 hybrid contribution -0.459 0.908 -0.335 1.071 sum 5.072 -9.156 2.287 10.714 Atomic orbital electron populations 1.69836 1.05807 1.27130 1.50996 1.25027 0.94994 0.99380 0.94315 0.86521 0.79861 0.82848 0.78259 1.20560 1.21294 1.19853 1.21640 0.93880 0.90486 1.49684 0.92059 1.19329 0.87651 0.91926 0.80664 1.86099 1.63460 1.50278 1.40458 1.22789 0.98352 0.95175 0.99243 1.23158 0.88182 0.98479 0.99939 1.65355 1.17704 1.20216 1.19201 1.22243 0.94680 0.90317 1.00168 1.22533 0.96344 0.97235 0.96036 1.23043 0.98272 0.99376 0.96830 1.22804 0.98240 0.99770 0.97204 1.22917 0.99610 0.97695 0.97216 1.22952 1.00219 0.96783 0.86875 0.92588 0.77231 0.90268 0.93248 0.91757 0.95637 0.91419 0.95483 0.88415 0.90544 0.91217 0.90419 0.91972 0.91772 0.90532 0.95332 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 10.72 55.43 0.59 -23.85 16 2 C 0.06 1.73 4.97 -17.82 -0.09 1.64 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.25 8.13 -34.44 -0.28 -14.53 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 9 C 0.24 6.23 1.07 -90.39 -0.10 6.14 16 10 O -0.60 -15.74 12.97 -35.23 -0.46 -16.20 16 11 C -0.12 -2.83 5.43 -25.35 -0.14 -2.96 16 12 C 0.03 0.62 6.49 -2.18 -0.01 0.61 16 13 N -0.50 -10.17 5.44 -229.98 -1.25 -11.42 16 14 C 0.05 0.89 4.82 -3.83 -0.02 0.88 16 15 C -0.10 -1.50 3.38 -89.81 -0.30 -1.80 16 16 C -0.14 -1.93 5.96 -25.92 -0.15 -2.09 16 17 C -0.14 -1.64 8.08 -25.92 -0.21 -1.85 16 18 C -0.14 -1.59 7.64 -25.92 -0.20 -1.79 16 19 C 0.06 1.32 4.20 -2.18 -0.01 1.31 16 20 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 21 H 0.38 10.07 7.59 45.56 0.35 10.41 16 22 H 0.08 2.09 6.95 -51.93 -0.36 1.73 16 23 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.49 7.92 -51.93 -0.41 0.08 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.10 1.54 8.14 -51.92 -0.42 1.11 16 29 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.03 0.63 7.56 -51.93 -0.39 0.24 16 36 H 0.07 1.69 6.85 -51.93 -0.36 1.33 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -27.70 281.06 -8.69 -36.40 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.28 Total: 9.15 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.51 Total: -14.45 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.66 Total: -35.26 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.46 Total: -16.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.70 -8.69 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.380 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds