Wall clock time and date at job start Sun Mar 29 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99977 * 2 1 4 4 C 1.53004 * 109.47204 * 125.00146 * 3 2 1 5 5 C 1.53002 * 109.46911 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46767 * 179.97438 * 5 4 3 7 7 C 1.48534 * 111.00058 * 52.60434 * 6 5 4 8 8 C 1.54935 * 103.22594 * 159.72420 * 7 6 5 9 9 C 1.54601 * 102.91947 * 322.57939 * 8 7 6 10 10 O 1.42894 * 110.39485 * 263.00065 * 9 8 7 11 11 C 1.50702 * 110.30353 * 140.87842 * 9 8 7 12 12 H 1.08008 * 119.99837 * 239.12616 * 11 9 8 13 13 C 1.37875 * 120.00314 * 59.12731 * 11 9 8 14 14 N 1.31515 * 119.99887 * 4.95740 * 13 11 9 15 15 Si 1.86801 * 119.99973 * 184.96284 * 13 11 9 16 16 H 1.48501 * 109.47482 * 94.99710 * 15 13 11 17 17 H 1.48502 * 109.46780 * 214.99557 * 15 13 11 18 18 H 1.48498 * 109.46977 * 334.99444 * 15 13 11 19 19 C 1.47900 * 110.99979 * 169.99945 * 6 5 4 20 20 H 1.07998 * 120.00013 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.99979 * 180.02562 * 1 2 3 22 22 H 1.07998 * 120.00013 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.47482 * 4.99687 * 3 2 1 24 24 H 1.09003 * 109.47478 * 244.99745 * 3 2 1 25 25 H 1.08992 * 109.46993 * 59.99751 * 4 3 2 26 26 H 1.08997 * 109.46683 * 299.99729 * 4 3 2 27 27 H 1.09001 * 109.47435 * 60.00294 * 5 4 3 28 28 H 1.08997 * 109.47218 * 299.99392 * 5 4 3 29 29 H 1.09007 * 110.66405 * 278.15387 * 7 6 5 30 30 H 1.08996 * 110.66839 * 41.28654 * 7 6 5 31 31 H 1.09001 * 110.71870 * 204.22989 * 8 7 6 32 32 H 1.08998 * 110.88115 * 81.01452 * 8 7 6 33 33 H 0.96693 * 114.00252 * 295.76731 * 10 9 8 34 34 H 0.96994 * 119.99825 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.91738 * 333.50766 * 19 6 5 36 36 H 1.09002 * 109.91546 * 94.80334 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7320 2.6855 2.3168 7 6 5.5944 1.4762 2.3262 8 6 6.7990 1.9066 3.2005 9 6 7.0064 3.3852 2.7993 10 8 8.0327 3.4938 1.8110 11 6 7.3577 4.2110 4.0100 12 1 6.7315 5.0432 4.2962 13 6 8.4785 3.9045 4.7521 14 7 9.2941 2.9545 4.3496 15 14 8.8386 4.8384 6.3293 16 1 8.2992 4.0811 7.4872 17 1 10.3066 5.0005 6.4844 18 1 8.1964 6.1760 6.2701 19 6 5.6542 3.8375 2.2178 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3586 2.1317 0.0895 24 1 2.6214 1.4026 -0.9314 25 1 3.7400 0.5066 1.0921 26 1 2.4773 1.2356 2.1130 27 1 3.0944 3.4847 1.2718 28 1 4.3574 2.7563 0.2506 29 1 5.0713 0.6342 2.7797 30 1 5.9210 1.2287 1.3162 31 1 7.6816 1.3141 2.9594 32 1 6.5587 1.8244 4.2604 33 1 8.9074 3.2221 2.1209 34 1 10.0823 2.7385 4.8719 35 1 5.7769 4.1262 1.1739 36 1 5.2639 4.6762 2.7943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:31 Heat of formation + Delta-G solvation = -40.065351 kcal Electronic energy + Delta-G solvation = -15764.547736 eV Core-core repulsion = 13248.552644 eV Total energy + Delta-G solvation = -2515.995092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.51299 -36.14055 -34.55823 -32.08172 -31.60674 -28.92973 -27.95103 -25.42321 -23.74560 -21.82816 -19.91328 -19.73336 -19.25568 -17.04422 -15.77290 -15.23153 -14.86657 -14.64616 -14.23065 -13.83505 -13.56913 -12.85782 -12.82351 -12.11327 -11.93530 -11.78625 -11.39495 -11.28089 -11.15344 -10.95078 -10.59499 -10.55665 -10.42202 -10.38294 -10.21345 -9.86876 -9.39765 -9.09476 -8.53446 -8.06942 -7.71549 -6.16729 -4.22486 2.19756 3.26168 3.33371 3.37595 4.35195 4.56954 4.84270 5.01680 5.11831 5.25364 5.42150 5.51639 5.67009 5.79861 5.81787 5.84873 5.95763 6.08264 6.15659 6.26967 6.35636 6.42620 6.49562 6.55271 6.57197 6.70152 6.98213 7.11273 7.35101 7.57065 7.72031 7.78652 7.89204 8.21128 8.79675 9.43510 9.55208 10.90947 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056812 B = 0.005373 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.736236 B = 5209.894803 C = 5282.746902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.095 4.095 4 C -0.113 4.113 5 C 0.046 3.954 6 N -0.516 5.516 7 C 0.032 3.968 8 C -0.117 4.117 9 C 0.241 3.759 10 O -0.596 6.596 11 C -0.529 4.529 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.054 3.946 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.382 0.618 34 H 0.266 0.734 35 H 0.035 0.965 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 -4.543 -5.984 13.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.151 4.151 5 C -0.082 4.082 6 N -0.240 5.240 7 C -0.096 4.096 8 C -0.156 4.156 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.567 4.567 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.073 4.073 20 H 0.113 0.887 21 H 0.112 0.888 22 H 0.125 0.875 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.268 -4.368 -5.830 13.418 hybrid contribution 1.160 0.115 0.498 1.268 sum -10.108 -4.252 -5.332 12.193 Atomic orbital electron populations 1.23812 0.95975 1.01607 1.02609 1.23015 0.96009 0.98721 0.98617 1.20772 0.98277 0.95119 0.99100 1.21583 0.97689 0.97756 0.98074 1.22293 0.95911 0.97471 0.92543 1.64841 1.16468 1.03377 1.39306 1.23284 0.94809 0.92977 0.98525 1.22943 0.94824 0.98998 0.98808 1.19386 0.83691 0.90961 0.85800 1.86091 1.21704 1.90377 1.42322 1.21713 1.09819 1.14975 1.10200 0.92008 1.25015 0.95619 0.94844 0.97876 1.69688 1.13767 1.31053 1.39338 0.86458 0.77357 0.80234 0.83232 1.20569 1.21198 1.19770 1.22862 0.92492 0.93150 0.98820 0.88693 0.88787 0.87523 0.91525 0.91153 0.91754 0.91177 0.91361 0.95255 0.91746 0.94966 0.91768 0.91464 0.76759 0.92434 0.94711 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 14.32 29.01 0.42 -1.51 16 2 C -0.15 -1.52 9.52 -36.03 -0.34 -1.86 16 3 C -0.09 -1.06 5.66 -27.88 -0.16 -1.22 16 4 C -0.11 -1.53 4.85 -26.73 -0.13 -1.66 16 5 C 0.05 0.75 5.03 -3.82 -0.02 0.73 16 6 N -0.52 -10.31 5.40 -230.45 -1.24 -11.55 16 7 C 0.03 0.64 5.10 -1.90 -0.01 0.63 16 8 C -0.12 -2.78 5.32 -24.87 -0.13 -2.92 16 9 C 0.24 6.16 0.99 -90.41 -0.09 6.07 16 10 O -0.60 -15.85 12.94 -35.23 -0.46 -16.30 16 11 C -0.53 -14.51 8.12 -34.44 -0.28 -14.79 16 12 H 0.06 1.70 7.36 -52.48 -0.39 1.31 16 13 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 14 N -0.90 -24.32 10.89 55.43 0.60 -23.72 16 15 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.05 1.23 6.17 -2.76 -0.02 1.21 16 20 H 0.09 0.84 7.84 -52.49 -0.41 0.43 16 21 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 22 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 23 H 0.07 0.71 7.79 -51.92 -0.40 0.30 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.89 6.80 -51.93 -0.35 0.54 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.48 7.81 -51.93 -0.41 0.08 16 29 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 30 H 0.03 0.64 8.00 -51.93 -0.42 0.22 16 31 H 0.06 1.58 7.99 -51.93 -0.41 1.16 16 32 H 0.07 1.70 7.85 -51.93 -0.41 1.29 16 33 H 0.38 10.26 7.29 45.56 0.33 10.60 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.03 0.78 7.39 -51.93 -0.38 0.39 16 36 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -27.68 290.41 -7.88 -35.56 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.28 Total: 9.24 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.86 Total: -13.58 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.64 Total: -35.27 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.46 Total: -16.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.68 -7.88 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.508 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds