Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50690 * 119.99970 * 2 1 4 4 C 1.53004 * 109.47361 * 125.00123 * 3 2 1 5 5 C 1.53004 * 109.47240 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.48535 * 111.00098 * 287.39520 * 6 5 4 8 8 C 1.55103 * 103.28125 * 200.33413 * 7 6 5 9 9 C 1.54601 * 102.84538 * 37.30582 * 8 7 6 10 10 O 1.42899 * 110.30773 * 97.11731 * 9 8 7 11 11 C 1.50700 * 110.30664 * 219.18372 * 9 8 7 12 12 H 1.07999 * 119.99988 * 117.20955 * 11 9 8 13 13 C 1.37885 * 120.00047 * 297.21135 * 11 9 8 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 9 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 C 1.47908 * 110.99869 * 169.99687 * 6 5 4 20 20 H 1.08004 * 119.99736 * 179.97438 * 1 2 3 21 21 H 1.07994 * 119.99653 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.99330 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47715 * 4.99830 * 3 2 1 24 24 H 1.09005 * 109.47408 * 244.99565 * 3 2 1 25 25 H 1.08997 * 109.46981 * 59.99692 * 4 3 2 26 26 H 1.09001 * 109.46415 * 299.99558 * 4 3 2 27 27 H 1.08997 * 109.47170 * 59.99432 * 5 4 3 28 28 H 1.08999 * 109.46733 * 299.99873 * 5 4 3 29 29 H 1.08996 * 110.66618 * 318.71599 * 7 6 5 30 30 H 1.08994 * 110.66413 * 81.67735 * 7 6 5 31 31 H 1.09003 * 110.70696 * 278.99712 * 8 7 6 32 32 H 1.09005 * 110.80877 * 155.66092 * 8 7 6 33 33 H 0.96699 * 114.00025 * 62.78843 * 10 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.91016 * 26.49117 * 19 6 5 36 36 H 1.08993 * 109.91789 * 265.20266 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6579 1.1812 6 7 4.7329 2.6849 2.3161 7 6 4.0050 2.8594 3.5990 8 6 5.1010 3.3861 4.5618 9 6 5.9407 4.3127 3.6527 10 8 5.5300 5.6718 3.8151 11 6 7.4068 4.1687 3.9706 12 1 8.0881 3.7965 3.2198 13 6 7.8783 4.5120 5.2200 14 7 7.0495 4.9703 6.1325 15 14 9.6956 4.3341 5.6137 16 1 10.4106 3.8069 4.4237 17 1 10.2547 5.6601 5.9805 18 1 9.8661 3.3934 6.7501 19 6 5.6560 3.8363 2.2163 20 1 -0.5400 -0.9354 -0.0004 21 1 -0.5399 0.9353 -0.0004 22 1 1.8500 -0.9354 0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6214 1.4025 -0.9314 25 1 3.7400 0.5065 1.0921 26 1 2.4772 1.2356 2.1130 27 1 3.0959 3.4846 1.2705 28 1 4.3584 2.7548 0.2498 29 1 3.2052 3.5920 3.4910 30 1 3.6075 1.9066 3.9484 31 1 5.7084 2.5642 4.9410 32 1 4.6572 3.9499 5.3824 33 1 5.6656 6.0197 4.7071 34 1 7.3812 5.2115 7.0115 35 1 5.1887 4.6383 1.6448 36 1 6.5846 3.5273 1.7366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = -59.481816 kcal Electronic energy + Delta-G solvation = -15728.399656 eV Core-core repulsion = 13211.562602 eV Total energy + Delta-G solvation = -2516.837053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16796 -37.43329 -36.04098 -34.14717 -32.94934 -30.40174 -29.79896 -27.00839 -25.39657 -22.94705 -21.52343 -21.25254 -20.56425 -19.10520 -17.00416 -16.90509 -16.56007 -16.15332 -15.77320 -15.35423 -14.76501 -14.54093 -14.04858 -13.87835 -13.48154 -13.23429 -13.07312 -12.96514 -12.59490 -12.52507 -12.27510 -12.21921 -11.95702 -11.94167 -11.59182 -11.48155 -11.04303 -10.60857 -10.17156 -10.09456 -9.33536 -8.21396 -6.35220 1.39985 1.42876 1.44876 1.54133 2.39871 2.98504 3.14417 3.87035 3.95728 4.02810 4.25112 4.28589 4.34166 4.41137 4.54149 4.58961 4.64620 4.67911 4.77254 4.84637 4.99500 5.07549 5.10946 5.24156 5.24868 5.41999 5.42645 5.60049 5.77019 5.79747 5.94527 5.99192 6.15941 6.27046 6.69522 7.34568 7.43389 8.84964 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.057026 B = 0.005322 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.885309 B = 5259.580749 C = 5342.610122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.098 4.098 5 C 0.045 3.955 6 N -0.520 5.520 7 C 0.043 3.957 8 C -0.110 4.110 9 C 0.224 3.776 10 O -0.602 6.602 11 C -0.555 4.555 12 H 0.054 0.946 13 C 0.027 3.973 14 N -0.915 5.915 15 Si 0.961 3.039 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.062 3.938 20 H 0.107 0.893 21 H 0.097 0.903 22 H 0.114 0.886 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.269 0.731 35 H 0.033 0.967 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -7.123 -8.225 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.178 4.178 3 C -0.127 4.127 4 C -0.136 4.136 5 C -0.083 4.083 6 N -0.244 5.244 7 C -0.085 4.085 8 C -0.149 4.149 9 C 0.184 3.816 10 O -0.411 6.411 11 C -0.593 4.593 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.556 5.556 15 Si 0.787 3.213 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.066 4.066 20 H 0.126 0.874 21 H 0.116 0.884 22 H 0.132 0.868 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.227 0.773 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.008 -7.614 -8.711 14.662 hybrid contribution 0.726 0.965 1.126 1.651 sum -8.282 -6.649 -7.584 13.051 Atomic orbital electron populations 1.24007 0.95888 1.02456 1.01211 1.23046 0.96340 0.98559 0.99859 1.20706 0.97864 0.95714 0.98443 1.21380 0.97308 0.96446 0.98440 1.22393 0.94098 0.97777 0.94024 1.64764 1.16722 1.40333 1.02589 1.23242 0.95160 0.99699 0.90375 1.22781 0.96067 0.98887 0.97140 1.19654 0.92025 0.79230 0.90672 1.86082 1.87361 1.30461 1.37219 1.21994 0.94474 1.44300 0.98514 0.92803 1.25714 1.02179 0.93733 0.95681 1.69747 1.36079 1.44409 1.05325 0.85459 0.80016 0.77783 0.78043 1.19588 1.20434 1.20325 1.22674 0.96449 0.90815 0.96697 0.87445 0.88447 0.86839 0.91583 0.90265 0.91306 0.92541 0.95270 0.90505 0.94656 0.89548 0.93430 0.93262 0.77313 0.92177 0.94824 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 14.32 67.77 0.97 -2.33 16 2 C -0.16 -2.94 9.52 25.64 0.24 -2.69 16 3 C -0.09 -1.79 5.66 29.85 0.17 -1.62 16 4 C -0.10 -2.43 5.29 30.60 0.16 -2.27 16 5 C 0.05 1.37 4.71 86.30 0.41 1.78 16 6 N -0.52 -20.12 5.25 -882.69 -4.63 -24.76 16 7 C 0.04 1.68 5.92 86.71 0.51 2.20 16 8 C -0.11 -5.27 5.42 31.86 0.17 -5.10 16 9 C 0.22 11.53 0.99 -10.66 -0.01 11.52 16 10 O -0.60 -32.55 12.92 -148.98 -1.93 -34.48 16 11 C -0.55 -30.78 8.11 25.60 0.21 -30.57 16 12 H 0.05 2.99 7.34 -2.91 -0.02 2.97 16 13 C 0.03 1.44 5.26 84.66 0.45 1.89 16 14 N -0.92 -49.91 10.88 21.45 0.23 -49.67 16 15 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 C 0.06 2.77 6.13 86.44 0.53 3.30 16 20 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 21 H 0.10 1.54 7.84 -2.91 -0.02 1.52 16 22 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 23 H 0.07 1.29 7.79 -2.39 -0.02 1.28 16 24 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.46 7.37 -2.39 -0.02 1.44 16 27 H 0.03 0.90 7.83 -2.39 -0.02 0.88 16 28 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.04 1.36 7.81 -2.39 -0.02 1.34 16 30 H 0.09 3.01 7.79 -2.39 -0.02 2.99 16 31 H 0.05 2.42 7.86 -2.39 -0.02 2.40 16 32 H 0.05 2.46 8.02 -2.38 -0.02 2.44 16 33 H 0.38 20.75 7.18 -74.06 -0.53 20.22 16 34 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.03 1.49 7.59 -2.39 -0.02 1.47 16 36 H 0.07 3.29 7.39 -2.39 -0.02 3.28 16 Total: -1.00 -57.95 291.82 0.02 -57.93 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.50 Total: 29.82 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.81 Total: -23.90 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -4.40 Total: -74.43 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.93 Total: -34.48 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -57.95 0.02 -57.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.553 kcal (2) G-P(sol) polarization free energy of solvation -57.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds