Wall clock time and date at job start Sun Mar 29 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00432 * 2 1 4 4 C 1.50701 * 119.99511 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47171 * 95.00523 * 4 2 1 6 6 N 1.46894 * 109.47052 * 179.97438 * 5 4 2 7 7 C 1.48562 * 111.00344 * 69.87193 * 6 5 4 8 8 C 1.54379 * 104.69842 * 159.09785 * 7 6 5 9 9 C 1.54257 * 105.06256 * 336.08765 * 8 7 6 10 10 O 1.42901 * 110.32530 * 118.99711 * 9 8 7 11 11 C 1.50699 * 110.32398 * 241.10546 * 9 8 7 12 12 H 1.07999 * 120.00074 * 118.54876 * 11 9 8 13 13 C 1.37874 * 120.00225 * 298.54451 * 11 9 8 14 14 N 1.31516 * 119.99741 * 0.02562 * 13 11 9 15 15 Si 1.86792 * 120.00595 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46923 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47381 * 119.99869 * 15 13 11 18 18 H 1.48500 * 109.47425 * 240.00505 * 15 13 11 19 19 C 1.48856 * 111.13147 * 185.19313 * 6 5 4 20 20 H 1.07995 * 120.00121 * 180.02562 * 1 2 3 21 21 H 1.07998 * 119.99711 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.46755 * 270.00090 * 3 2 1 23 23 H 1.08997 * 109.46855 * 29.99474 * 3 2 1 24 24 H 1.08991 * 109.47013 * 149.99479 * 3 2 1 25 25 H 1.08998 * 109.47845 * 335.00065 * 4 2 1 26 26 H 1.09003 * 109.46833 * 214.99887 * 4 2 1 27 27 H 1.09001 * 109.46965 * 59.99609 * 5 4 2 28 28 H 1.09003 * 109.46723 * 299.99432 * 5 4 2 29 29 H 1.09002 * 110.41176 * 40.25880 * 7 6 5 30 30 H 1.09002 * 110.41204 * 277.93787 * 7 6 5 31 31 H 1.08998 * 110.32365 * 94.98307 * 8 7 6 32 32 H 1.08997 * 110.32065 * 217.08696 * 8 7 6 33 33 H 0.96704 * 113.99873 * 61.45149 * 10 9 8 34 34 H 0.97003 * 119.99972 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.39541 * 82.21242 * 19 6 5 36 36 H 1.09004 * 110.49212 * 319.84370 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4274 -1.6846 -1.4363 6 7 3.1623 -2.9565 -1.4356 7 6 2.2694 -4.0872 -1.0730 8 6 2.9831 -5.3413 -1.6218 9 6 3.8870 -4.8228 -2.7591 10 8 5.2584 -5.1004 -2.4689 11 6 3.4923 -5.4530 -4.0699 12 1 3.1473 -4.8337 -4.8846 13 6 3.5718 -6.8202 -4.2292 14 7 3.9916 -7.5745 -3.2369 15 14 3.0833 -7.6014 -5.8541 16 1 2.6498 -6.5431 -6.8015 17 1 4.2463 -8.3284 -6.4233 18 1 1.9659 -8.5533 -5.6297 19 6 3.6435 -3.2990 -2.8020 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5399 0.9353 -0.0004 22 1 2.2452 1.6196 -1.0276 23 1 1.4745 2.0647 0.5137 24 1 3.0159 1.1746 0.5139 25 1 1.4385 -2.0853 0.4352 26 1 2.9741 -1.1987 0.5900 27 1 3.0524 -0.9044 -1.8708 28 1 1.5166 -1.7911 -2.0257 29 1 1.2941 -3.9678 -1.5448 30 1 2.1614 -4.1543 0.0095 31 1 3.5856 -5.8059 -0.8413 32 1 2.2538 -6.0524 -2.0099 33 1 5.4601 -6.0425 -2.3865 34 1 4.0478 -8.5364 -3.3490 35 1 4.5720 -2.7716 -3.0210 36 1 2.8846 -3.0560 -3.5458 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:36 Heat of formation + Delta-G solvation = -59.190939 kcal Electronic energy + Delta-G solvation = -15895.778077 eV Core-core repulsion = 13378.953637 eV Total energy + Delta-G solvation = -2516.824440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15836 -37.71083 -36.11956 -34.17916 -32.26211 -29.86660 -29.09455 -28.02822 -26.29848 -23.98190 -21.71675 -21.32351 -19.19747 -18.98363 -17.24750 -16.89999 -16.14276 -15.99091 -15.59329 -15.32424 -14.68852 -14.50778 -14.21666 -14.05807 -13.54214 -13.27180 -13.17171 -12.91713 -12.56268 -12.48545 -12.39478 -12.30629 -12.15769 -11.92401 -11.73919 -11.55279 -11.06183 -10.61353 -10.11246 -9.89269 -9.37358 -8.22271 -6.38997 1.34011 1.38485 1.41735 1.52235 2.37494 3.02697 3.14193 3.87971 3.97452 4.04458 4.14020 4.17287 4.39207 4.40880 4.50834 4.65909 4.70633 4.73105 4.86605 4.88236 4.98565 5.09663 5.10036 5.16187 5.19534 5.23339 5.46337 5.57963 5.69825 5.77191 5.84419 6.01895 6.18737 6.27239 6.68071 7.33025 7.47482 8.83331 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048136 B = 0.005956 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.550388 B = 4700.349063 C = 4828.907237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.118 4.118 4 C -0.074 4.074 5 C 0.053 3.947 6 N -0.517 5.517 7 C 0.042 3.958 8 C -0.112 4.112 9 C 0.234 3.766 10 O -0.596 6.596 11 C -0.563 4.563 12 H 0.053 0.947 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.058 3.942 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.373 0.627 34 H 0.269 0.731 35 H 0.066 0.934 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 11.388 5.176 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.131 4.131 3 C -0.175 4.175 4 C -0.112 4.112 5 C -0.075 4.075 6 N -0.241 5.241 7 C -0.086 4.086 8 C -0.151 4.151 9 C 0.194 3.806 10 O -0.404 6.404 11 C -0.601 4.601 12 H 0.071 0.929 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.786 3.214 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.070 4.070 20 H 0.111 0.889 21 H 0.130 0.870 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.222 0.778 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.498 11.950 5.591 14.293 hybrid contribution -0.840 -1.535 -1.432 2.261 sum -6.338 10.415 4.159 12.882 Atomic orbital electron populations 1.23827 0.95158 1.02363 1.02256 1.21844 0.95700 0.95780 0.99820 1.20885 1.00267 0.93810 1.02512 1.20576 1.00188 0.94709 0.95702 1.22240 0.96238 0.91700 0.97299 1.65455 1.33269 1.02187 1.23190 1.23059 0.94086 0.91001 1.00457 1.22640 0.98894 0.95955 0.97616 1.19511 0.79229 0.90215 0.91601 1.86126 1.29702 1.30370 1.94201 1.21995 1.45430 0.92930 0.99727 0.92896 1.25697 0.94042 0.97455 0.99936 1.69804 1.46938 1.05852 1.32473 0.85480 0.77989 0.78224 0.79741 1.19603 1.20403 1.20228 1.22939 0.98827 0.95993 0.89241 0.88943 0.86975 0.91221 0.90640 0.91663 0.91771 0.90801 0.90644 0.95198 0.94252 0.89805 0.94128 0.93317 0.77801 0.92119 0.91580 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.99 13.89 67.78 0.94 -3.05 16 2 C -0.13 -2.84 5.31 -16.49 -0.09 -2.93 16 3 C -0.12 -2.09 10.03 71.24 0.71 -1.37 16 4 C -0.07 -1.93 5.43 29.85 0.16 -1.77 16 5 C 0.05 1.66 4.81 86.31 0.41 2.07 16 6 N -0.52 -20.17 5.38 -880.65 -4.74 -24.91 16 7 C 0.04 1.64 5.73 86.45 0.50 2.13 16 8 C -0.11 -5.39 5.55 31.49 0.17 -5.22 16 9 C 0.23 12.09 1.06 -10.65 -0.01 12.08 16 10 O -0.60 -32.82 12.94 -148.98 -1.93 -34.74 16 11 C -0.56 -30.88 8.08 25.60 0.21 -30.68 16 12 H 0.05 2.90 7.58 -2.91 -0.02 2.87 16 13 C 0.03 1.56 5.02 84.65 0.43 1.99 16 14 N -0.91 -49.55 10.81 21.45 0.23 -49.32 16 15 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 C 0.06 2.59 5.77 86.39 0.50 3.09 16 20 H 0.09 1.90 7.99 -2.91 -0.02 1.88 16 21 H 0.11 1.83 8.04 -2.91 -0.02 1.80 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 24 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 25 H 0.06 1.70 7.10 -2.39 -0.02 1.68 16 26 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 27 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.03 0.94 7.88 -2.39 -0.02 0.92 16 29 H 0.04 1.48 7.82 -2.39 -0.02 1.46 16 30 H 0.08 2.94 7.76 -2.39 -0.02 2.92 16 31 H 0.04 2.01 7.98 -2.39 -0.02 1.99 16 32 H 0.05 2.50 7.24 -2.39 -0.02 2.49 16 33 H 0.37 20.81 7.32 -74.05 -0.54 20.27 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.07 2.99 8.08 -2.39 -0.02 2.97 16 36 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 Total: -1.00 -58.05 291.85 0.02 -58.03 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.50 Total: 30.07 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.94 Total: -23.65 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -4.51 Total: -74.23 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.93 Total: -34.74 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -58.05 0.02 -58.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.165 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds