Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 115.55316 * 2 1 4 4 N 1.46900 * 109.46697 * 34.33590 * 3 2 1 5 5 C 1.48720 * 111.01831 * 74.48907 * 4 3 2 6 6 C 1.54381 * 104.51692 * 158.96284 * 5 4 3 7 7 C 1.54257 * 105.14978 * 336.27274 * 6 5 4 8 8 O 1.42910 * 110.32027 * 241.04997 * 7 6 5 9 9 C 1.50695 * 110.32879 * 118.94622 * 7 6 5 10 10 H 1.07997 * 120.00075 * 241.45186 * 9 7 6 11 11 C 1.37884 * 119.99868 * 61.44756 * 9 7 6 12 12 N 1.31515 * 119.99923 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99830 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46692 * 90.00325 * 13 11 9 15 15 H 1.48494 * 109.46866 * 210.00236 * 13 11 9 16 16 H 1.48498 * 109.47020 * 329.99972 * 13 11 9 17 17 C 1.48567 * 110.99718 * 189.99889 * 4 3 2 18 18 C 1.52999 * 117.51825 * 145.70920 * 2 1 3 19 19 C 1.52997 * 60.00471 * 107.47435 * 18 2 1 20 20 H 1.09002 * 109.47259 * 85.57913 * 1 2 3 21 21 H 1.08998 * 109.47318 * 205.58140 * 1 2 3 22 22 H 1.09006 * 109.46891 * 325.58109 * 1 2 3 23 23 H 1.08997 * 109.47422 * 274.33057 * 3 2 1 24 24 H 1.08999 * 109.46632 * 154.33061 * 3 2 1 25 25 H 1.09004 * 110.38960 * 40.24251 * 5 4 3 26 26 H 1.08996 * 110.50963 * 277.74694 * 5 4 3 27 27 H 1.09002 * 110.32526 * 217.32092 * 6 5 4 28 28 H 1.08998 * 110.32190 * 95.21733 * 6 5 4 29 29 H 0.96699 * 114.00154 * 298.54485 * 8 7 6 30 30 H 0.97005 * 119.99855 * 179.97438 * 12 11 9 31 31 H 1.08999 * 110.41133 * 82.17552 * 17 4 3 32 32 H 1.09001 * 110.41003 * 319.73948 * 17 4 3 33 33 H 1.09001 * 117.49855 * 214.96902 * 18 2 1 34 34 H 1.09006 * 117.50005 * 359.97438 * 18 2 1 35 35 H 1.08998 * 117.50126 * 252.51563 * 19 18 2 36 36 H 1.08998 * 117.49466 * 107.48567 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3693 2.3153 0.7812 5 6 1.5089 2.0577 2.2393 6 6 1.0717 3.3781 2.9092 7 6 1.2909 4.4657 1.8375 8 8 2.2398 5.4307 2.2966 9 6 -0.0148 5.1373 1.4984 10 1 -0.4037 5.0848 0.4923 11 6 -0.7130 5.8186 2.4728 12 7 -0.2392 5.8829 3.6979 13 14 -2.3320 6.6505 2.0526 14 1 -3.4493 5.6967 2.2692 15 1 -2.5190 7.8382 2.9241 16 1 -2.3144 7.0779 0.6305 17 6 1.8440 3.7125 0.6087 18 6 2.2369 -1.1211 0.7645 19 6 2.2364 -1.1208 -0.7655 20 1 -0.3634 0.0792 -1.0246 21 1 -0.3634 -0.9269 0.4437 22 1 -0.3633 0.8478 0.5809 23 1 2.2767 1.7416 -1.0247 24 1 3.1823 1.3085 0.4452 25 1 2.5458 1.8307 2.4873 26 1 0.8560 1.2409 2.5469 27 1 1.6878 3.5802 3.7854 28 1 0.0196 3.3299 3.1899 29 1 1.9651 5.9039 3.0939 30 1 -0.7303 6.3626 4.3833 31 1 1.4435 4.1393 -0.3108 32 1 2.9335 3.7456 0.6011 33 1 3.1721 -0.8752 1.2675 34 1 1.6119 -1.8587 1.2680 35 1 1.6110 -1.8582 -1.2687 36 1 3.1712 -0.8747 -1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -41.030054 kcal Electronic energy + Delta-G solvation = -16340.308776 eV Core-core repulsion = 13824.271851 eV Total energy + Delta-G solvation = -2516.036925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38170 -38.67098 -36.22675 -34.14601 -31.64313 -29.81369 -29.09806 -27.24292 -25.61498 -23.22947 -22.12242 -21.29221 -19.74764 -19.02245 -17.06593 -16.83280 -16.52322 -15.83306 -15.64392 -15.10902 -15.05904 -14.12359 -14.01383 -13.65766 -13.47113 -13.24589 -13.04044 -12.86346 -12.70162 -12.37747 -12.33861 -12.20447 -12.03449 -12.01857 -11.76024 -11.09561 -10.85305 -10.58707 -10.42122 -10.11452 -9.30682 -8.17785 -6.30372 1.41707 1.43251 1.53106 2.41889 2.83600 3.02816 3.18355 3.83966 3.97427 4.01005 4.08206 4.19915 4.32313 4.36867 4.46760 4.56846 4.69123 4.75419 4.81681 4.85039 5.02547 5.05136 5.10646 5.15871 5.26865 5.29465 5.31830 5.39906 5.64726 5.67233 5.79361 6.01117 6.19749 6.30300 6.74462 7.37408 7.45251 8.88240 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038574 B = 0.007605 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.704788 B = 3680.951876 C = 3971.435163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C 0.081 3.919 4 N -0.498 5.498 5 C 0.049 3.951 6 C -0.113 4.113 7 C 0.231 3.769 8 O -0.603 6.603 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.025 3.975 12 N -0.916 5.916 13 Si 0.958 3.042 14 H -0.276 1.276 15 H -0.281 1.281 16 H -0.273 1.273 17 C 0.060 3.940 18 C -0.176 4.176 19 C -0.160 4.160 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.376 0.624 30 H 0.267 0.733 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -11.621 -4.958 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.131 4.131 3 C -0.048 4.048 4 N -0.222 5.222 5 C -0.079 4.079 6 C -0.151 4.151 7 C 0.191 3.809 8 O -0.412 6.412 9 C -0.578 4.578 10 H 0.070 0.930 11 C -0.175 4.175 12 N -0.557 5.557 13 Si 0.784 3.216 14 H -0.202 1.202 15 H -0.206 1.206 16 H -0.198 1.198 17 C -0.068 4.068 18 C -0.213 4.213 19 C -0.198 4.198 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.226 0.774 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.756 -11.832 -5.501 13.336 hybrid contribution -0.277 1.032 0.869 1.377 sum 2.479 -10.800 -4.632 12.010 Atomic orbital electron populations 1.21197 0.91807 1.01734 1.01664 1.21381 0.95459 0.89544 1.06739 1.21800 0.93325 0.91420 0.98216 1.65252 1.49867 1.01091 1.06008 1.23019 0.98684 0.97729 0.88421 1.22635 0.99925 0.94998 0.97583 1.19539 0.86309 0.85539 0.89465 1.86080 1.48525 1.57179 1.49402 1.21846 1.06207 1.33558 0.96219 0.93041 1.25675 1.00786 0.96243 0.94756 1.69781 1.40563 1.43132 1.02191 0.85562 0.79930 0.78042 0.78079 1.20197 1.20639 1.19830 1.22807 0.96208 0.89225 0.98529 1.23200 1.02203 1.01006 0.94876 1.23082 1.02378 1.00257 0.94048 0.92681 0.92379 0.92233 0.90649 0.94717 0.94468 0.90192 0.94251 0.93420 0.77403 0.92335 0.91240 0.95053 0.89263 0.88187 0.87575 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 9.73 71.98 0.70 -2.22 16 2 C -0.13 -3.39 2.17 -52.18 -0.11 -3.51 16 3 C 0.08 2.48 4.97 86.30 0.43 2.91 16 4 N -0.50 -19.17 3.87 -881.04 -3.41 -22.57 16 5 C 0.05 1.91 5.96 86.42 0.51 2.43 16 6 C -0.11 -5.38 5.55 31.49 0.17 -5.20 16 7 C 0.23 11.84 1.05 -10.65 -0.01 11.82 16 8 O -0.60 -32.53 12.94 -148.98 -1.93 -34.46 16 9 C -0.54 -29.91 8.10 25.60 0.21 -29.70 16 10 H 0.05 2.88 7.54 -2.91 -0.02 2.86 16 11 C 0.02 1.35 5.02 84.66 0.43 1.77 16 12 N -0.92 -50.19 10.81 21.45 0.23 -49.95 16 13 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.06 2.67 5.74 86.45 0.50 3.17 16 18 C -0.18 -3.85 9.82 30.59 0.30 -3.55 16 19 C -0.16 -3.21 9.97 30.60 0.31 -2.91 16 20 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.06 1.37 7.90 -2.39 -0.02 1.35 16 22 H 0.06 1.99 6.46 -2.38 -0.02 1.98 16 23 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 24 H 0.03 1.04 7.53 -2.39 -0.02 1.03 16 25 H 0.04 1.36 7.75 -2.38 -0.02 1.34 16 26 H 0.08 2.90 7.98 -2.39 -0.02 2.88 16 27 H 0.04 1.90 7.98 -2.39 -0.02 1.88 16 28 H 0.05 2.49 7.24 -2.39 -0.02 2.48 16 29 H 0.38 20.63 7.32 -74.06 -0.54 20.09 16 30 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 31 H 0.07 3.12 7.68 -2.39 -0.02 3.11 16 32 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 33 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.10 2.00 8.05 -2.38 -0.02 1.98 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -57.59 286.79 0.86 -56.73 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.51 Total: 29.80 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.43 Total: -24.99 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -3.17 Total: -72.53 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.93 Total: -34.46 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -57.59 0.86 -56.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.698 kcal (2) G-P(sol) polarization free energy of solvation -57.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds