Wall clock time and date at job start Sun Mar 29 2020 21:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99435 * 2 1 4 4 H 1.48503 * 109.47080 * 239.99785 * 3 2 1 5 5 H 1.48493 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47367 * 119.99794 * 3 2 1 7 7 C 1.37875 * 120.00661 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46973 * 174.35042 * 9 7 2 11 11 C 1.46896 * 111.00037 * 285.50916 * 10 9 7 12 12 C 1.53001 * 117.49691 * 137.39311 * 11 10 9 13 13 C 1.53009 * 117.49653 * 68.73913 * 11 10 9 14 14 C 1.46904 * 110.99560 * 161.55764 * 10 9 7 15 15 C 1.52997 * 112.84640 * 172.75750 * 14 10 9 16 16 O 1.42906 * 109.47008 * 180.02562 * 15 14 10 17 17 C 1.53785 * 113.61594 * 41.45347 * 14 10 9 18 18 C 1.53783 * 87.07908 * 220.01439 * 17 14 10 19 19 C 1.53777 * 87.08153 * 25.43330 * 18 17 14 20 20 H 0.96995 * 120.00365 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47226 * 54.34817 * 9 7 2 22 22 H 1.08997 * 109.47150 * 294.35185 * 9 7 2 23 23 H 1.08991 * 115.55272 * 283.06471 * 11 10 9 24 24 H 1.09004 * 117.49854 * 0.02562 * 12 11 10 25 25 H 1.09000 * 117.49824 * 145.01978 * 12 11 10 26 26 H 1.09002 * 117.49321 * 214.97740 * 13 11 10 27 27 H 1.08998 * 117.49597 * 359.96941 * 13 11 10 28 28 H 1.09005 * 109.47614 * 299.99721 * 15 14 10 29 29 H 1.09004 * 109.47524 * 60.00138 * 15 14 10 30 30 H 0.96708 * 113.99894 * 180.02562 * 16 15 14 31 31 H 1.08999 * 113.61256 * 334.56665 * 17 14 10 32 32 H 1.08996 * 113.61510 * 105.46352 * 17 14 10 33 33 H 1.08999 * 113.61462 * 270.87977 * 18 17 14 34 34 H 1.08998 * 113.60916 * 139.98006 * 18 17 14 35 35 H 1.09003 * 113.61598 * 220.02047 * 19 18 17 36 36 H 1.09004 * 113.69173 * 89.12382 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0005 10 7 2.2003 -3.6122 -0.1352 11 6 2.7064 -3.7078 -1.5109 12 6 4.2013 -3.9755 -1.6967 13 6 3.6276 -2.5900 -2.0039 14 6 1.5901 -4.8790 0.2905 15 6 2.4772 -6.0918 0.0026 16 8 1.8167 -7.2802 0.4429 17 6 0.1362 -5.0512 -0.1801 18 6 -0.1560 -5.6596 1.2017 19 6 1.0388 -4.8457 1.7257 20 1 -0.4850 0.8400 -0.0004 21 1 0.5512 -2.5146 -0.8348 22 1 0.7023 -2.6018 0.9366 23 1 2.0220 -4.1515 -2.2338 24 1 4.8091 -4.0811 -0.7980 25 1 4.5004 -4.5951 -2.5420 26 1 3.5494 -2.2988 -3.0514 27 1 3.8576 -1.7836 -1.3076 28 1 2.6665 -6.1576 -1.0688 29 1 3.4235 -5.9840 0.5328 30 1 2.3228 -8.0904 0.2919 31 1 -0.3792 -4.1077 -0.3597 32 1 0.0240 -5.7589 -1.0014 33 1 -0.0027 -6.7379 1.2453 34 1 -1.1131 -5.3498 1.6215 35 1 1.6554 -5.3875 2.4429 36 1 0.7715 -3.8458 2.0676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595540156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:56 Heat of formation + Delta-G solvation = -7.672476 kcal Electronic energy + Delta-G solvation = -16613.498633 eV Core-core repulsion = 14098.908201 eV Total energy + Delta-G solvation = -2514.590432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24375 -38.06552 -36.70324 -35.02868 -33.15972 -29.85149 -27.53323 -26.61511 -24.23115 -23.66313 -23.01885 -21.41773 -19.11523 -18.81577 -18.25681 -16.78583 -16.45888 -16.22502 -15.94758 -15.72888 -15.38622 -14.39516 -13.94134 -13.73498 -13.59430 -13.17710 -12.98932 -12.93387 -12.66225 -12.40458 -12.35656 -11.80631 -11.77171 -11.42750 -11.19158 -11.17924 -10.90556 -10.70419 -10.57432 -10.40830 -8.92071 -8.14037 -6.21343 1.41027 1.43635 1.50872 2.41178 2.92500 3.12672 3.18766 3.50040 3.76487 3.85273 4.02247 4.15124 4.20369 4.29337 4.42109 4.60591 4.69382 4.78817 4.85574 4.89414 4.91234 4.96006 5.06800 5.11801 5.18176 5.30262 5.32516 5.44089 5.51246 5.67948 5.80169 6.15770 6.46163 6.69950 6.93664 7.04359 7.45774 8.96229 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.009369 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.112155 B = 2988.000964 C = 3598.512146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.507 4.507 8 H 0.071 0.929 9 C 0.217 3.783 10 N -0.497 5.497 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.174 4.174 14 C 0.087 3.913 15 C 0.122 3.878 16 O -0.574 6.574 17 C -0.168 4.168 18 C -0.117 4.117 19 C -0.126 4.126 20 H 0.261 0.739 21 H -0.037 1.037 22 H 0.007 0.993 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.395 0.605 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -12.593 -1.735 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.546 4.546 8 H 0.089 0.911 9 C 0.091 3.909 10 N -0.221 5.221 11 C -0.108 4.108 12 C -0.180 4.180 13 C -0.211 4.211 14 C -0.003 4.003 15 C 0.044 3.956 16 O -0.382 6.382 17 C -0.208 4.208 18 C -0.154 4.154 19 C -0.163 4.163 20 H 0.069 0.931 21 H -0.019 1.019 22 H 0.025 0.975 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.245 0.755 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.245 -11.959 -1.255 13.550 hybrid contribution -0.543 0.859 -0.674 1.219 sum 5.702 -11.100 -1.929 12.628 Atomic orbital electron populations 1.70093 1.07685 1.27528 1.52602 1.25845 0.95606 1.02864 0.95449 0.85563 0.78223 0.78526 0.79105 1.19077 1.21328 1.19493 1.21565 0.93770 0.90667 1.48571 0.91133 1.19341 0.89761 0.88211 0.93545 1.61776 1.37686 1.02414 1.20239 1.22101 0.92965 1.05489 0.90235 1.23103 0.93538 0.98285 1.03109 1.23121 1.03580 0.93297 1.01117 1.22473 0.91371 0.90017 0.96480 1.21447 0.93066 0.82924 0.98209 1.86425 1.48883 1.16995 1.85931 1.23444 0.99002 0.99730 0.98611 1.22701 0.96873 1.01045 0.94815 1.22988 0.98010 0.99362 0.95979 0.93064 1.01931 0.97477 0.91641 0.88657 0.86651 0.89058 0.89038 0.92569 0.92289 0.75452 0.93171 0.91662 0.86950 0.92786 0.90677 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.51 -28.53 7.79 25.60 0.20 -28.33 16 8 H 0.07 3.85 5.59 -2.91 -0.02 3.84 16 9 C 0.22 11.63 3.32 85.56 0.28 11.92 16 10 N -0.50 -21.49 4.64 -823.32 -3.82 -25.31 16 11 C 0.00 0.04 3.60 44.92 0.16 0.20 16 12 C -0.14 -4.21 9.75 30.62 0.30 -3.91 16 13 C -0.17 -6.48 9.42 30.62 0.29 -6.19 16 14 C 0.09 3.20 1.16 4.05 0.00 3.21 16 15 C 0.12 3.36 5.91 71.98 0.43 3.79 16 16 O -0.57 -13.26 10.54 -148.98 -1.57 -14.83 16 17 C -0.17 -6.42 6.79 31.12 0.21 -6.21 16 18 C -0.12 -3.95 7.53 31.12 0.23 -3.71 16 19 C -0.13 -4.70 6.93 31.12 0.22 -4.48 16 20 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 21 H -0.04 -2.22 7.02 -2.39 -0.02 -2.24 16 22 H 0.01 0.43 5.56 -2.39 -0.01 0.41 16 23 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 25 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.09 3.94 5.29 -2.39 -0.01 3.93 16 28 H 0.06 1.46 6.94 -2.38 -0.02 1.44 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.40 4.86 9.12 -74.05 -0.68 4.19 16 31 H 0.05 2.29 5.99 -2.39 -0.01 2.27 16 32 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 33 H 0.11 3.38 6.15 -2.39 -0.01 3.36 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 36 H 0.06 2.49 6.01 -2.38 -0.01 2.47 16 Total: -1.00 -65.88 278.02 0.11 -65.77 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.40 Total: 18.00 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 2.79 Total: -33.29 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.53 Total: -82.38 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.57 Total: -14.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.88 0.11 -65.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595540156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.102 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds