Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.42907 * 113.99743 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46664 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47282 * 64.99931 * 12 11 10 14 14 C 1.47171 * 111.00085 * 66.04660 * 13 12 11 15 15 C 1.52992 * 108.58990 * 199.59227 * 14 13 12 16 16 C 1.52968 * 109.63302 * 305.87338 * 15 14 13 17 17 H 1.09005 * 115.50579 * 232.25733 * 16 15 14 18 18 C 1.53599 * 115.98852 * 89.09703 * 16 15 14 19 19 C 1.51598 * 59.91198 * 249.66667 * 18 16 15 20 20 H 1.09007 * 116.33372 * 253.26891 * 19 18 16 21 21 C 1.46740 * 110.99933 * 189.14060 * 13 12 11 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09001 * 109.46908 * 299.99630 * 11 10 9 26 26 H 1.09000 * 109.47082 * 59.99894 * 11 10 9 27 27 H 1.08999 * 109.46685 * 184.99969 * 12 11 10 28 28 H 1.09002 * 109.47410 * 304.99801 * 12 11 10 29 29 H 1.09006 * 109.61441 * 319.32288 * 14 13 12 30 30 H 1.08995 * 109.61997 * 79.85464 * 14 13 12 31 31 H 1.09002 * 109.44304 * 65.92279 * 15 14 13 32 32 H 1.08999 * 109.44020 * 185.82374 * 15 14 13 33 33 H 1.09004 * 117.51936 * 356.98424 * 18 16 15 34 34 H 1.08991 * 117.52855 * 142.09428 * 18 16 15 35 35 H 1.08992 * 109.30514 * 300.48099 * 21 13 12 36 36 H 1.08997 * 109.30119 * 59.86505 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 0.0000 12 6 2.6477 -5.9563 -0.0006 13 7 3.4087 -5.8878 1.2540 14 6 2.5619 -6.2414 2.4045 15 6 3.2152 -5.6975 3.6765 16 6 4.6570 -6.2002 3.7691 17 1 4.9265 -6.6824 4.7088 18 6 5.7208 -5.3214 3.0943 19 6 5.3683 -6.6740 2.5073 20 1 6.1065 -7.4653 2.6385 21 6 4.5881 -6.7593 1.2019 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 0.8898 24 1 0.6239 -2.5567 -0.8903 25 1 0.9450 -4.9822 0.8903 26 1 0.9443 -4.9827 -0.8897 27 1 2.1816 -6.9375 -0.0898 28 1 3.3207 -5.7958 -0.8430 29 1 1.5739 -5.7975 2.2819 30 1 2.4727 -7.3255 2.4737 31 1 3.2119 -4.6078 3.6486 32 1 2.6551 -6.0394 4.5468 33 1 5.3771 -4.4370 2.5578 34 1 6.6843 -5.2235 3.5942 35 1 4.2690 -7.7876 1.0324 36 1 5.2322 -6.4452 0.3806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595811555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -22.348614 kcal Electronic energy + Delta-G solvation = -15798.590683 eV Core-core repulsion = 13283.363846 eV Total energy + Delta-G solvation = -2515.226837 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55909 -36.81713 -34.93603 -32.61762 -31.12998 -29.42153 -26.87178 -24.94496 -23.78444 -22.23518 -21.15433 -20.86089 -18.38873 -16.57449 -16.29537 -15.62016 -15.20515 -14.87915 -14.25758 -14.15519 -13.76961 -13.41735 -12.97382 -12.58764 -12.16921 -12.02816 -11.80544 -11.46585 -11.25832 -10.95525 -10.79127 -10.65289 -10.59598 -10.20073 -9.92925 -9.77995 -9.58649 -9.03376 -8.72489 -8.07694 -7.99293 -6.04931 -4.05698 3.36477 3.38587 3.43079 3.82513 4.09723 4.40530 4.74153 4.88823 4.98977 5.05442 5.23943 5.31475 5.42382 5.43737 5.49744 5.59444 5.68337 5.84395 5.86143 5.91900 6.01828 6.06534 6.08834 6.16413 6.25643 6.36332 6.46012 6.54830 7.17191 7.33272 7.35213 7.50600 7.86831 8.23697 8.69223 9.09050 9.58921 11.06767 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.006272 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.513330 B = 4463.271236 C = 4860.731501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.061 3.939 13 N -0.520 5.520 14 C 0.050 3.950 15 C -0.084 4.084 16 C -0.150 4.150 17 H 0.096 0.904 18 C -0.164 4.164 19 C -0.147 4.147 20 H 0.096 0.904 21 C 0.085 3.915 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.001 0.999 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -14.314 4.906 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.012 4.012 12 C -0.067 4.067 13 N -0.244 5.244 14 C -0.077 4.077 15 C -0.122 4.122 16 C -0.168 4.168 17 H 0.114 0.886 18 C -0.201 4.201 19 C -0.165 4.165 20 H 0.115 0.885 21 C -0.042 4.042 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.925 -13.663 4.955 16.100 hybrid contribution -0.211 -0.033 -0.096 0.234 sum 6.715 -13.696 4.859 16.009 Atomic orbital electron populations 1.69961 1.06093 1.27119 1.50870 1.24943 0.94953 0.99364 0.95288 0.86411 0.79312 0.82008 0.78835 1.21225 1.20022 1.20061 1.21030 0.94048 0.89381 1.50379 0.91593 1.20159 0.88857 0.83939 0.95034 1.87950 1.34593 1.12304 1.94995 1.22287 0.93840 0.86323 0.98739 1.22125 0.96260 0.95994 0.92315 1.62105 1.07273 1.52434 1.02607 1.22208 0.97042 0.97366 0.91114 1.21102 0.92824 1.01858 0.96382 1.22230 0.94544 1.04380 0.95677 0.88601 1.22968 0.98751 0.95196 1.03202 1.21792 1.01955 0.98799 0.93969 0.88547 1.21402 0.92328 0.94091 0.96427 0.92714 0.97990 0.98073 0.94541 0.94359 0.94490 0.90122 0.90275 0.95128 0.90241 0.91765 0.87284 0.89680 0.95107 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.47 5.69 36.00 0.20 5.68 16 10 O -0.38 -9.42 10.27 -35.23 -0.36 -9.79 16 11 C 0.07 1.26 6.02 37.16 0.22 1.48 16 12 C 0.06 0.95 5.33 -3.82 -0.02 0.93 16 13 N -0.52 -8.14 4.40 -234.98 -1.03 -9.18 16 14 C 0.05 0.72 5.42 -3.68 -0.02 0.70 16 15 C -0.08 -1.14 6.09 -26.75 -0.16 -1.30 16 16 C -0.15 -1.86 6.29 -90.63 -0.57 -2.43 16 17 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.16 -2.16 9.75 -27.13 -0.26 -2.42 16 19 C -0.15 -1.79 6.03 -91.98 -0.55 -2.34 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.09 1.12 5.39 -4.26 -0.02 1.10 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 24 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.04 0.68 6.09 -51.93 -0.32 0.36 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.08 1.19 5.84 -51.93 -0.30 0.89 16 30 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16 31 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.03 0.37 8.13 -51.93 -0.42 -0.06 16 36 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -31.57 291.41 -8.96 -40.53 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.06 Total: -3.75 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.61 Total: -12.79 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.30 Total: -35.86 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.36 Total: -9.79 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.57 -8.96 -40.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595811555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.184 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds