Wall clock time and date at job start Sun Mar 29 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 115.55751 * 2 1 4 4 C 1.53065 * 117.49409 * 214.29428 * 2 1 3 5 5 C 1.52996 * 117.50345 * 145.68763 * 2 1 3 6 6 C 1.53000 * 117.49454 * 359.97438 * 5 2 1 7 7 N 1.46492 * 117.50155 * 214.97945 * 5 2 1 8 8 C 1.34774 * 120.00249 * 81.43910 * 7 5 2 9 9 O 1.21289 * 119.99881 * 354.95180 * 8 7 5 10 10 C 1.50700 * 120.00359 * 174.94770 * 8 7 5 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47123 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00054 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99874 * 0.27845 * 14 12 11 16 16 Si 1.86799 * 120.00163 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46997 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46778 * 120.00304 * 16 14 12 19 19 H 1.48497 * 109.47109 * 239.99855 * 16 14 12 20 20 H 1.09002 * 109.46524 * 274.30789 * 1 2 3 21 21 H 1.08997 * 109.47493 * 34.30960 * 1 2 3 22 22 H 1.08997 * 109.46595 * 154.31496 * 1 2 3 23 23 H 1.08997 * 109.47105 * 205.69365 * 3 2 1 24 24 H 1.09004 * 109.47260 * 325.69333 * 3 2 1 25 25 H 1.09007 * 109.47264 * 85.68904 * 3 2 1 26 26 H 1.09007 * 117.51373 * 145.03349 * 4 2 1 27 27 H 1.08999 * 117.49665 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47058 * 280.23090 * 6 5 2 29 29 H 1.08995 * 109.47506 * 40.24123 * 6 5 2 30 30 H 1.09005 * 109.46951 * 160.23452 * 6 5 2 31 31 H 0.97004 * 120.00233 * 261.44092 * 7 5 2 32 32 H 1.08996 * 109.47060 * 60.00132 * 10 8 7 33 33 H 1.08997 * 109.46865 * 299.99723 * 10 8 7 34 34 H 1.08996 * 109.47376 * 59.99919 * 11 10 8 35 35 H 1.09003 * 109.47125 * 299.99967 * 11 10 8 36 36 H 0.97001 * 119.99453 * 359.71930 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2367 -1.1217 -0.7650 5 6 2.2366 -1.1209 0.7650 6 6 1.3590 -2.1557 1.4719 7 7 3.4933 -0.7905 1.4413 8 6 3.4717 -0.1939 2.6496 9 8 2.4161 0.1524 3.1362 10 6 4.7592 0.0430 3.3962 11 6 4.4565 0.7290 4.7299 12 6 5.7439 0.9653 5.4768 13 1 6.6840 0.6566 5.0438 14 6 5.7218 1.5755 6.7129 15 7 4.5766 1.9465 7.2428 16 14 7.3176 1.8677 7.6390 17 1 8.4569 1.3566 6.8355 18 1 7.4929 3.3233 7.8760 19 1 7.2713 1.1563 8.9417 20 1 -0.3632 0.0772 1.0248 21 1 -0.3634 0.8488 -0.5792 22 1 -0.3632 -0.9261 -0.4454 23 1 3.1823 1.3086 -0.4455 24 1 1.5811 2.0743 -0.5792 25 1 2.2772 1.7414 1.0248 26 1 3.1720 -0.8764 -1.2684 27 1 1.6114 -1.8595 -1.2677 28 1 1.0015 -1.7447 2.4161 29 1 0.5078 -2.4041 0.8381 30 1 1.9427 -3.0558 1.6654 31 1 4.3411 -1.0010 1.0195 32 1 5.4131 0.6793 2.8001 33 1 5.2519 -0.9112 3.5825 34 1 3.8028 0.0923 5.3259 35 1 3.9635 1.6832 4.5440 36 1 3.7480 1.7944 6.7620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598384032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:02 Heat of formation + Delta-G solvation = -63.943206 kcal Electronic energy + Delta-G solvation = -15765.148571 eV Core-core repulsion = 13248.118057 eV Total energy + Delta-G solvation = -2517.030514 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25279 -39.15941 -35.93580 -34.46956 -32.76382 -31.02026 -28.95242 -27.87886 -27.20073 -24.27303 -21.93706 -21.47099 -19.49691 -18.99427 -17.74293 -16.94796 -16.60020 -15.66898 -15.58542 -15.49530 -14.81666 -14.37803 -14.34573 -14.07168 -13.65427 -13.51489 -13.31015 -13.25122 -12.99132 -12.70145 -12.68304 -12.08069 -12.05597 -12.04130 -11.85766 -11.21634 -11.04874 -10.81396 -10.57496 -10.48962 -9.75806 -8.71136 -6.42857 1.53182 1.64381 1.67138 1.79859 2.13408 2.58679 2.68750 3.15806 3.56640 3.74519 3.88201 3.98125 4.13935 4.30501 4.37968 4.53052 4.65244 4.72014 4.74071 4.82689 4.84216 4.91243 4.97299 5.00035 5.02886 5.22081 5.26637 5.27788 5.36011 5.38058 5.65947 5.92464 6.16293 6.50059 6.60793 7.35314 7.43474 8.68769 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052659 B = 0.005352 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.597140 B = 5230.722727 C = 5274.398430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C -0.108 4.108 4 C -0.129 4.129 5 C 0.079 3.921 6 C -0.117 4.117 7 N -0.689 5.689 8 C 0.515 3.485 9 O -0.577 6.577 10 C -0.114 4.114 11 C 0.029 3.971 12 C -0.618 4.618 13 H 0.066 0.934 14 C -0.046 4.046 15 N -0.941 5.941 16 Si 1.130 2.870 17 H -0.260 1.260 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.037 0.963 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.415 0.585 32 H 0.100 0.900 33 H 0.101 0.899 34 H -0.022 1.022 35 H -0.022 1.022 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 -7.990 -19.462 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.166 4.166 4 C -0.166 4.166 5 C -0.008 4.008 6 C -0.175 4.175 7 N -0.342 5.342 8 C 0.304 3.696 9 O -0.456 6.456 10 C -0.154 4.154 11 C -0.008 4.008 12 C -0.656 4.656 13 H 0.084 0.916 14 C -0.242 4.242 15 N -0.578 5.578 16 Si 0.950 3.050 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.206 1.206 20 H 0.056 0.944 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.132 0.868 27 H 0.146 0.854 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.252 0.748 32 H 0.118 0.882 33 H 0.119 0.881 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.463 -7.161 -17.739 19.288 hybrid contribution -0.688 -0.418 -1.037 1.313 sum -3.151 -7.579 -18.777 20.493 Atomic orbital electron populations 1.21338 0.91222 1.03152 1.01071 1.22064 0.95853 0.91726 1.04449 1.21219 1.00472 0.94811 1.00072 1.23757 1.03097 0.99874 0.89837 1.20995 0.87968 0.99818 0.92061 1.21432 0.99212 0.96772 1.00132 1.45263 1.08807 1.61428 1.18675 1.21157 0.91301 0.75796 0.81387 1.90638 1.34486 1.51649 1.68828 1.21510 0.94401 1.03037 0.96461 1.18834 0.95769 0.93516 0.92729 1.22547 0.94001 1.42975 1.06042 0.91586 1.27685 1.06238 0.92983 0.97299 1.70846 0.98942 1.46856 1.41159 0.82807 0.70292 0.77081 0.74833 1.18393 1.20564 1.20578 0.94399 0.91291 0.90188 0.91734 0.91084 0.95943 0.86844 0.85364 0.94888 0.89013 0.91691 0.74781 0.88171 0.88123 1.00380 1.00371 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 8.72 71.98 0.63 -1.69 16 2 C -0.14 -3.24 2.70 -52.16 -0.14 -3.38 16 3 C -0.11 -2.81 9.19 71.98 0.66 -2.15 16 4 C -0.13 -2.06 9.44 30.62 0.29 -1.78 16 5 C 0.08 1.94 2.25 3.60 0.01 1.94 16 6 C -0.12 -2.94 9.05 71.98 0.65 -2.29 16 7 N -0.69 -19.16 4.86 -422.94 -2.06 -21.22 16 8 C 0.52 20.31 7.12 87.66 0.62 20.93 16 9 O -0.58 -28.39 14.78 -3.06 -0.05 -28.43 16 10 C -0.11 -4.75 5.64 29.85 0.17 -4.58 16 11 C 0.03 1.65 3.57 29.85 0.11 1.76 16 12 C -0.62 -36.25 9.11 25.60 0.23 -36.02 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C -0.05 -2.74 5.46 84.65 0.46 -2.28 16 15 N -0.94 -62.19 13.65 21.45 0.29 -61.89 16 16 Si 1.13 51.18 29.90 68.60 2.05 53.23 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.07 1.27 7.92 -2.39 -0.02 1.26 16 22 H 0.08 1.25 7.28 -2.39 -0.02 1.23 16 23 H 0.06 1.46 7.90 -2.39 -0.02 1.44 16 24 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 25 H 0.02 0.76 7.44 -2.38 -0.02 0.74 16 26 H 0.11 1.49 8.05 -2.38 -0.02 1.47 16 27 H 0.13 1.44 8.05 -2.39 -0.02 1.42 16 28 H 0.03 1.08 7.28 -2.39 -0.02 1.07 16 29 H 0.09 1.73 6.97 -2.39 -0.02 1.71 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.41 8.54 8.83 -92.71 -0.82 7.72 16 32 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 34 H -0.02 -1.40 7.96 -2.39 -0.02 -1.42 16 35 H -0.02 -1.39 7.97 -2.39 -0.02 -1.41 16 36 H 0.25 17.32 7.22 -92.71 -0.67 16.65 16 Total: -1.00 -78.12 297.89 4.26 -73.86 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.33 Total: 13.98 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 3.69 Total: -29.53 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.76 Total: -83.11 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -78.12 4.26 -73.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598384032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.917 kcal (2) G-P(sol) polarization free energy of solvation -78.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds