Wall clock time and date at job start Sun Mar 29 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 119.99875 * 2 1 4 4 H 1.08000 * 120.00193 * 200.33377 * 3 2 1 5 5 C 1.38813 * 119.99890 * 20.34133 * 3 2 1 6 6 N 1.31613 * 119.99821 * 14.99940 * 5 3 2 7 7 Si 1.86806 * 119.99876 * 194.99605 * 5 3 2 8 8 H 1.48504 * 109.46795 * 85.00322 * 7 5 3 9 9 H 1.48493 * 109.46977 * 205.00274 * 7 5 3 10 10 H 1.48501 * 109.46990 * 325.00200 * 7 5 3 11 11 C 1.46500 * 120.00081 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47256 * 269.99636 * 11 2 1 13 13 H 1.09000 * 109.47190 * 59.99960 * 12 11 2 14 14 O 1.42895 * 109.47330 * 300.00241 * 12 11 2 15 15 C 1.52994 * 109.47290 * 179.97438 * 12 11 2 16 16 N 1.46500 * 109.47459 * 185.00121 * 15 12 11 17 17 C 1.34946 * 126.03946 * 124.94792 * 16 15 12 18 18 C 1.35322 * 107.74766 * 180.02562 * 17 16 15 19 19 C 1.39868 * 107.91717 * 0.02562 * 18 17 16 20 20 N 1.30838 * 108.20568 * 359.97438 * 19 18 17 21 21 H 1.08997 * 109.47192 * 275.09088 * 1 2 3 22 22 H 1.08997 * 109.47301 * 35.09233 * 1 2 3 23 23 H 1.08998 * 109.47262 * 155.09144 * 1 2 3 24 24 H 0.97003 * 119.99596 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47053 * 149.99512 * 11 2 1 26 26 H 1.08999 * 109.46974 * 30.00120 * 11 2 1 27 27 H 0.96703 * 113.99907 * 299.99775 * 14 12 11 28 28 H 1.08999 * 109.47210 * 65.00483 * 15 12 11 29 29 H 1.09002 * 109.47525 * 305.00071 * 15 12 11 30 30 H 1.07999 * 126.12544 * 0.04562 * 17 16 15 31 31 H 1.08002 * 126.03917 * 180.25866 * 18 17 16 32 32 H 1.08004 * 125.89970 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1791 1.2151 -0.3250 5 6 1.5204 2.3506 0.4179 6 7 0.3872 2.2837 1.0839 7 14 2.2821 4.0127 0.0350 8 1 1.8681 4.4457 -1.3239 9 1 1.8217 5.0102 1.0340 10 1 3.7621 3.9035 0.0903 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.5002 -1.8416 1.9555 14 8 3.2248 -0.7154 2.1157 15 6 3.2170 -3.0363 1.4411 16 7 3.3569 -3.5200 2.8168 17 6 2.9711 -4.7286 3.2766 18 6 3.2731 -4.7842 4.5945 19 6 3.8631 -3.5677 4.9525 20 7 3.9141 -2.8091 3.8876 21 1 -0.3633 0.0912 1.0236 22 1 -0.3634 0.8408 -0.5908 23 1 -0.3634 -0.9320 -0.4328 24 1 -0.0526 3.0976 1.3756 25 1 3.1498 -1.1382 -0.5144 26 1 1.6084 -2.0281 -0.5148 27 1 4.0873 -0.5467 1.7122 28 1 4.2052 -2.8855 1.0067 29 1 2.6692 -3.7715 0.8515 30 1 2.5051 -5.5114 2.6965 31 1 3.0939 -5.6216 5.2527 32 1 4.2165 -3.3008 5.9376 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:48 Heat of formation + Delta-G solvation = 34.862066 kcal Electronic energy + Delta-G solvation = -15649.582764 eV Core-core repulsion = 13033.296425 eV Total energy + Delta-G solvation = -2616.286339 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90158 -38.90073 -36.57080 -34.03437 -33.17650 -30.96617 -30.18958 -27.95807 -26.97315 -23.98744 -22.26727 -21.75073 -21.49366 -18.86953 -18.14736 -17.13873 -16.81461 -16.29582 -15.92956 -15.32611 -15.27960 -14.73975 -14.60985 -14.24596 -13.69832 -13.51418 -13.11487 -12.88792 -12.79328 -12.49345 -12.20326 -12.02055 -11.89605 -11.81416 -11.39898 -10.94984 -10.57093 -10.20808 -9.40636 -8.73999 -7.77969 -5.21235 1.13861 1.46650 1.47843 1.55616 1.77348 2.06323 2.54624 3.34288 3.44772 3.76977 3.92988 4.02098 4.13046 4.26829 4.41223 4.53486 4.57083 4.81416 4.85284 4.92253 4.98083 5.21336 5.24144 5.31303 5.64145 5.73375 5.85576 6.27580 6.36169 6.93744 7.08318 7.20091 7.91299 8.32659 9.27202 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.042598 B = 0.006696 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.143560 B = 4180.874117 C = 4435.483752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.609 5.609 3 C -0.237 4.237 4 H 0.076 0.924 5 C -0.062 4.062 6 N -0.945 5.945 7 Si 0.965 3.035 8 H -0.285 1.285 9 H -0.304 1.304 10 H -0.269 1.269 11 C 0.120 3.880 12 C 0.086 3.914 13 H 0.052 0.948 14 O -0.551 6.551 15 C 0.103 3.897 16 N -0.374 5.374 17 C 0.044 3.956 18 C -0.289 4.289 19 C 0.014 3.986 20 N -0.321 5.321 21 H -0.008 1.008 22 H 0.017 0.983 23 H 0.038 0.962 24 H 0.242 0.758 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.367 0.633 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.210 0.790 31 H 0.168 0.832 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -16.129 0.210 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.330 5.330 3 C -0.367 4.367 4 H 0.093 0.907 5 C -0.256 4.256 6 N -0.593 5.593 7 Si 0.794 3.206 8 H -0.211 1.211 9 H -0.231 1.231 10 H -0.194 1.194 11 C -0.007 4.007 12 C 0.023 3.977 13 H 0.070 0.930 14 O -0.355 6.355 15 C -0.018 4.018 16 N -0.157 5.157 17 C -0.102 4.102 18 C -0.318 4.318 19 C -0.172 4.172 20 N -0.143 5.143 21 H 0.011 0.989 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.213 0.787 28 H 0.115 0.885 29 H 0.157 0.843 30 H 0.226 0.774 31 H 0.186 0.814 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.320 -14.803 -0.003 15.730 hybrid contribution 0.166 0.506 0.314 0.618 sum 5.486 -14.296 0.311 15.316 Atomic orbital electron populations 1.20544 0.83014 0.96261 0.97148 1.44144 1.01965 1.01825 1.85091 1.19439 0.96927 0.85681 1.34677 0.90659 1.25705 0.98799 1.01709 0.99356 1.70274 1.20658 1.26595 1.41777 0.85305 0.78350 0.80182 0.76755 1.21149 1.23106 1.19351 1.21727 0.97497 0.87988 0.93495 1.22842 0.92861 0.85978 0.96043 0.93007 1.86734 1.32678 1.60113 1.55972 1.22727 1.03184 0.98288 0.77642 1.48924 1.46325 1.11431 1.09025 1.23290 1.00513 0.89843 0.96581 1.21838 1.12820 1.01043 0.96105 1.24412 1.00520 0.93538 0.98724 1.77558 1.20431 1.20912 0.95418 0.98930 0.96461 0.94379 0.94900 0.91540 0.90213 0.78656 0.88495 0.84316 0.77356 0.81408 0.78875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 9.02 127.77 1.15 9.91 16 2 N -0.61 -29.80 2.88 -726.98 -2.09 -31.89 16 3 C -0.24 -12.90 9.03 84.03 0.76 -12.15 16 4 H 0.08 3.91 7.86 -2.91 -0.02 3.88 16 5 C -0.06 -3.58 5.06 84.86 0.43 -3.15 16 6 N -0.94 -58.82 10.67 21.65 0.23 -58.59 16 7 Si 0.96 46.76 29.58 68.60 2.03 48.79 16 8 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.12 4.27 5.43 86.38 0.47 4.74 16 12 C 0.09 3.06 3.45 30.59 0.11 3.16 16 13 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 14 O -0.55 -24.11 11.65 -148.98 -1.74 -25.85 16 15 C 0.10 2.54 6.18 86.38 0.53 3.07 16 16 N -0.37 -10.79 3.68 -348.07 -1.28 -12.07 16 17 C 0.04 0.98 11.45 83.54 0.96 1.93 16 18 C -0.29 -6.69 10.80 21.99 0.24 -6.45 16 19 C 0.01 0.39 12.03 85.24 1.02 1.42 16 20 N -0.32 -11.27 11.56 -57.02 -0.66 -11.93 16 21 H -0.01 -0.44 7.40 -2.39 -0.02 -0.45 16 22 H 0.02 0.92 7.21 -2.39 -0.02 0.90 16 23 H 0.04 1.54 7.83 -2.39 -0.02 1.52 16 24 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 26 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 27 H 0.37 13.90 9.05 -74.06 -0.67 13.23 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.14 2.21 8.07 -2.39 -0.02 2.19 16 30 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -76.64 275.85 2.60 -74.04 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.44 Total: 15.00 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.67 Total: 2.49 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.80 Total: -114.48 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.74 Total: -25.85 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -76.64 2.60 -74.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.904 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds