Wall clock time and date at job start Sun Mar 29 2020 22:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.46498 * 120.00546 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47258 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.47073 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47308 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99831 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00309 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99798 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00347 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47034 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47015 * 119.99726 * 13 11 9 16 16 H 1.48496 * 109.47184 * 239.99851 * 13 11 9 17 17 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 18 18 C 1.53781 * 87.08260 * 220.02231 * 17 2 1 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 2 20 20 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 21 21 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 22 22 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 23 23 H 0.97001 * 119.99598 * 0.02562 * 5 3 2 24 24 H 1.08998 * 109.46877 * 300.00500 * 6 5 3 25 25 H 1.09002 * 109.47037 * 59.99656 * 6 5 3 26 26 H 1.08998 * 109.47708 * 300.00143 * 7 6 5 27 27 H 1.09002 * 109.47071 * 60.00462 * 7 6 5 28 28 H 1.08998 * 109.47124 * 300.00688 * 8 7 6 29 29 H 1.09002 * 109.46641 * 60.00387 * 8 7 6 30 30 H 0.97000 * 119.99890 * 180.02562 * 12 11 9 31 31 H 1.09001 * 113.61250 * 105.47049 * 17 2 1 32 32 H 1.08997 * 113.61225 * 334.56890 * 17 2 1 33 33 H 1.09002 * 113.61445 * 139.98212 * 18 17 2 34 34 H 1.09002 * 113.61408 * 270.79943 * 18 17 2 35 35 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 36 36 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.2369 3.6585 0.8779 7 6 1.5590 4.4976 1.9628 8 6 2.1532 5.9075 1.9629 9 6 1.4860 6.7339 3.0319 10 1 0.7154 6.2969 3.6499 11 6 1.8591 8.0476 3.2212 12 7 2.7977 8.5795 2.4691 13 14 1.0315 9.0721 4.5459 14 1 0.0161 8.2466 5.2479 15 1 2.0507 9.5382 5.5202 16 1 0.3694 10.2460 3.9225 17 6 2.1460 -0.9281 -1.0601 18 6 3.1923 -1.3136 -0.0011 19 6 2.1479 -0.9296 1.0604 20 1 -0.3634 -1.0080 0.1995 21 1 -0.3634 0.6770 0.7732 22 1 -0.3633 0.3312 -0.9729 23 1 0.9704 2.0761 1.5105 24 1 3.3070 3.6022 1.0771 25 1 2.0724 4.1217 -0.0950 26 1 0.4890 4.5539 1.7632 27 1 1.7232 4.0345 2.9358 28 1 3.2232 5.8509 2.1627 29 1 1.9894 6.3708 0.9899 30 1 3.0605 9.5036 2.6025 31 1 2.5650 -0.3971 -1.9149 32 1 1.4945 -1.7523 -1.3505 33 1 3.4443 -2.3741 -0.0021 34 1 4.0717 -0.6696 -0.0014 35 1 1.4969 -1.7542 1.3508 36 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610540727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:08 Heat of formation + Delta-G solvation = -45.770056 kcal Electronic energy + Delta-G solvation = -15299.109774 eV Core-core repulsion = 12782.867308 eV Total energy + Delta-G solvation = -2516.242467 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60615 -37.53992 -35.33358 -33.34154 -31.40417 -29.99923 -26.84308 -25.77231 -24.22698 -22.85960 -21.18773 -20.61341 -18.75310 -16.59709 -16.37072 -15.66588 -15.49978 -14.80252 -14.50801 -14.37850 -13.84301 -13.37253 -13.17636 -12.70245 -12.36125 -12.27904 -11.84358 -11.71219 -11.45786 -11.03772 -10.92321 -10.73459 -10.58025 -10.43705 -10.36496 -9.87371 -9.77271 -9.32255 -9.09772 -8.75288 -8.38086 -6.02428 -4.05548 2.76916 3.29572 3.36162 3.38033 3.41500 4.31321 4.43361 4.44051 4.64359 4.70215 4.95963 5.28336 5.33469 5.44351 5.51228 5.51744 5.61416 5.74882 5.77601 5.78054 5.86461 5.98179 6.09844 6.16155 6.28073 6.50843 6.59600 6.84009 7.00200 7.63155 7.74630 7.75483 7.96396 8.36866 8.43634 9.01353 9.58788 11.08936 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.060088 B = 0.004362 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.871458 B = 6418.208822 C = 6603.924251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.531 3.469 4 O -0.542 6.542 5 N -0.723 5.723 6 C 0.116 3.884 7 C -0.120 4.120 8 C 0.023 3.977 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.123 4.123 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.398 0.602 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -19.156 -3.220 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 C 0.317 3.683 4 O -0.419 6.419 5 N -0.373 5.373 6 C -0.007 4.007 7 C -0.158 4.158 8 C -0.015 4.015 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.155 4.155 18 C -0.179 4.179 19 C -0.160 4.160 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.232 0.768 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.409 -18.750 -3.816 19.436 hybrid contribution -0.767 0.656 1.056 1.461 sum -4.175 -18.095 -2.760 18.774 Atomic orbital electron populations 1.21724 0.92415 1.02470 1.02577 1.22020 0.96515 0.92714 1.00437 1.19909 0.82217 0.85700 0.80514 1.90677 1.31277 1.80548 1.39423 1.46182 1.41359 1.12856 1.36930 1.21650 0.98193 0.80130 1.00706 1.21885 0.99532 0.98433 0.95996 1.19040 0.96345 0.88577 0.97495 1.21241 1.20837 0.96248 1.17684 0.92594 1.25032 0.95151 0.97990 0.96302 1.69978 1.29983 1.14018 1.39304 0.86525 0.79389 0.80260 0.81753 1.19756 1.20988 1.20992 1.22824 0.97599 0.97837 0.97278 1.22836 0.97628 1.01336 0.96055 1.22990 0.98251 0.98320 0.96475 0.91558 0.92083 0.91917 0.76806 0.91824 0.91798 0.92737 0.92751 0.96271 0.96266 0.92978 0.90090 0.89670 0.91357 0.89730 0.89173 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.12 37.15 0.34 -0.85 16 2 C -0.11 -1.25 1.26 -154.76 -0.20 -1.45 16 3 C 0.53 8.08 6.66 -10.99 -0.07 8.01 16 4 O -0.54 -10.38 15.76 5.55 0.09 -10.29 16 5 N -0.72 -10.67 5.44 -60.30 -0.33 -10.99 16 6 C 0.12 2.08 5.67 -4.05 -0.02 2.06 16 7 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 10 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.12 -1.23 7.02 -25.92 -0.18 -1.41 16 18 C -0.14 -1.43 7.73 -25.92 -0.20 -1.63 16 19 C -0.12 -1.16 7.23 -25.82 -0.19 -1.34 16 20 H 0.07 0.46 7.95 -51.93 -0.41 0.05 16 21 H 0.06 0.51 7.00 -51.93 -0.36 0.15 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.40 4.82 7.36 -40.82 -0.30 4.52 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.01 7.43 -51.93 -0.39 0.62 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.09 0.66 7.97 -51.93 -0.41 0.25 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -31.82 298.01 -7.31 -39.12 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.06 Total: -0.54 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.21 Total: -12.10 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.41 Total: -37.16 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.82 -7.31 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.647 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds