Wall clock time and date at job start Sun Mar 29 2020 21:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.53778 * 113.61727 * 274.13766 * 16 15 14 18 18 C 1.53956 * 87.02468 * 220.04570 * 17 16 15 19 19 C 1.53784 * 113.61658 * 176.52792 * 16 15 14 20 20 H 0.97006 * 119.99550 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 24 24 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 25 25 H 0.96995 * 120.00423 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 27 27 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 28 28 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 29 29 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 30 30 H 1.09000 * 112.84915 * 45.33452 * 16 15 14 31 31 H 1.08996 * 113.61184 * 334.56845 * 17 16 15 32 32 H 1.09000 * 113.61578 * 105.46835 * 17 16 15 33 33 H 1.09002 * 113.53647 * 270.81670 * 18 17 16 34 34 H 1.08996 * 113.66740 * 139.92974 * 18 17 16 35 35 H 1.08998 * 113.61407 * 254.52625 * 19 16 15 36 36 H 1.08996 * 113.61156 * 25.35491 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4866 -2.6365 0.0001 12 6 6.1604 -3.8038 -0.0003 13 8 5.5540 -4.8541 -0.0002 14 6 7.6674 -3.8038 0.0003 15 6 8.1774 -5.2462 0.0003 16 6 9.7074 -5.2463 0.0003 17 6 10.3234 -5.1447 -1.4050 18 6 11.3698 -6.1707 -0.9330 19 6 10.3234 -6.6528 0.0857 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8905 23 1 3.6579 -3.1506 -0.8897 24 1 3.6586 -3.1502 0.8903 25 1 5.9716 -1.7965 -0.0003 26 1 8.0311 -3.2894 -0.8892 27 1 8.0304 -3.2904 0.8908 28 1 7.8137 -5.7602 0.8901 29 1 7.8145 -5.7600 -0.8898 30 1 10.1306 -4.5402 0.7147 31 1 9.6719 -5.5175 -2.1953 32 1 10.7425 -4.1635 -1.6281 33 1 12.2485 -5.7169 -0.4747 34 1 11.6218 -6.9169 -1.6865 35 1 10.7424 -6.8873 1.0642 36 1 9.6713 -7.4388 -0.2951 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:30 Heat of formation + Delta-G solvation = -69.769985 kcal Electronic energy + Delta-G solvation = -14865.188740 eV Core-core repulsion = 12347.905558 eV Total energy + Delta-G solvation = -2517.283182 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79041 -39.55859 -36.65830 -34.79103 -33.72198 -31.93996 -27.94573 -26.46175 -26.05176 -23.11717 -22.50103 -21.18684 -20.23773 -19.00517 -17.91648 -16.89026 -16.68513 -16.29806 -16.20180 -15.54296 -15.42298 -14.73941 -14.47760 -14.22382 -13.63126 -13.35654 -13.26128 -13.08536 -12.81101 -12.29658 -12.16186 -12.15572 -11.87296 -11.76281 -11.53343 -11.37762 -11.12098 -10.94549 -10.79756 -10.68750 -10.02608 -8.31140 -6.38888 1.38846 1.41878 1.53250 1.71252 2.34503 2.36525 3.03901 3.71338 3.78588 3.82126 4.00973 4.04392 4.28391 4.35817 4.41177 4.45236 4.70409 4.73898 4.77221 4.89561 4.94420 4.95565 5.07491 5.13457 5.16879 5.22422 5.34691 5.39595 5.44905 5.48372 5.65240 5.71932 6.21148 6.64577 6.71560 7.25815 7.35357 8.85881 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.065990 B = 0.003969 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.207556 B = 7052.678356 C = 7346.566813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.143 3.857 11 N -0.719 5.719 12 C 0.498 3.502 13 O -0.598 6.598 14 C -0.126 4.126 15 C -0.091 4.091 16 C -0.107 4.107 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.144 4.144 20 H 0.268 0.732 21 H 0.038 0.962 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.415 0.585 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.865 -4.963 -0.602 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.581 4.581 8 H 0.044 0.956 9 C -0.049 4.049 10 C 0.018 3.982 11 N -0.371 5.371 12 C 0.287 3.713 13 O -0.480 6.480 14 C -0.166 4.166 15 C -0.129 4.129 16 C -0.125 4.125 17 C -0.177 4.177 18 C -0.177 4.177 19 C -0.182 4.182 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.252 0.748 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.281 -5.599 -0.600 25.901 hybrid contribution -0.678 0.709 -0.034 0.981 sum 24.603 -4.891 -0.633 25.093 Atomic orbital electron populations 1.70088 1.08663 1.28494 1.51946 1.26129 0.95725 1.04020 0.93579 0.85497 0.79661 0.77072 0.79386 1.18910 1.21223 1.15832 1.21286 0.91748 0.93327 1.51692 0.95557 1.19642 0.94309 0.92889 0.98099 1.20993 0.79239 0.98347 0.99582 1.46141 1.07102 1.09462 1.74376 1.21700 0.92195 0.82816 0.74587 1.90666 1.72117 1.33159 1.52030 1.21710 0.87817 1.00370 1.06659 1.21270 0.95157 0.94731 1.01769 1.22591 0.93048 0.98271 0.98562 1.23033 0.98212 1.00178 0.96302 1.22846 0.97116 0.98921 0.98807 1.22969 0.98414 0.96699 1.00086 0.92290 0.94391 0.94554 0.94209 0.94193 0.74827 0.86501 0.86267 0.92959 0.93083 0.87692 0.90919 0.90438 0.89205 0.91506 0.91085 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.00 0.14 5.47 84.65 0.46 0.60 16 3 Si 0.96 42.26 27.47 68.60 1.88 44.15 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 7 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C 0.14 5.94 5.61 86.38 0.48 6.43 16 11 N -0.72 -22.37 5.56 -463.06 -2.57 -24.94 16 12 C 0.50 15.47 7.83 87.66 0.69 16.15 16 13 O -0.60 -24.71 15.98 -3.03 -0.05 -24.76 16 14 C -0.13 -2.40 5.70 29.85 0.17 -2.23 16 15 C -0.09 -1.87 4.33 30.59 0.13 -1.74 16 16 C -0.11 -1.55 3.64 -10.27 -0.04 -1.59 16 17 C -0.14 -1.87 7.65 31.18 0.24 -1.63 16 18 C -0.14 -1.71 8.09 31.18 0.25 -1.46 16 19 C -0.14 -2.10 7.65 31.12 0.24 -1.86 16 20 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 21 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 22 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 23 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.42 9.69 8.47 -92.71 -0.79 8.91 16 26 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.05 1.23 7.83 -2.39 -0.02 1.21 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.10 7.92 -2.39 -0.02 1.09 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -72.63 298.24 2.76 -69.87 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.20 Total: 14.03 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 3.00 Total: -18.82 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -2.27 Total: -84.46 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Total: -72.63 2.76 -69.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.096 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds