Wall clock time and date at job start Sun Mar 29 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48502 * 109.47128 * 240.00018 * 3 2 1 5 5 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47492 * 120.00065 * 3 2 1 7 7 C 1.37881 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99370 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47143 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46835 * 179.97438 * 11 10 9 13 13 C 1.47213 * 110.99981 * 53.51315 * 12 11 10 14 14 C 1.53038 * 109.25749 * 178.43188 * 13 12 11 15 15 O 1.42958 * 109.67051 * 299.94097 * 14 13 12 16 16 C 1.43228 * 113.68915 * 61.68836 * 15 14 13 17 17 C 1.47119 * 110.99685 * 176.29439 * 12 11 10 18 18 C 1.52762 * 117.80554 * 38.87350 * 17 12 11 19 19 C 1.52792 * 117.76101 * 329.91345 * 17 12 11 20 20 H 0.96996 * 120.00546 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47238 * 59.99640 * 9 7 2 22 22 H 1.09002 * 109.46827 * 300.00382 * 9 7 2 23 23 H 1.09004 * 109.46907 * 60.00161 * 10 9 7 24 24 H 1.09001 * 109.47058 * 300.00365 * 10 9 7 25 25 H 1.09001 * 109.47472 * 300.00149 * 11 10 9 26 26 H 1.09004 * 109.47057 * 60.00290 * 11 10 9 27 27 H 1.09000 * 109.50115 * 298.35971 * 13 12 11 28 28 H 1.09000 * 109.50752 * 58.49059 * 13 12 11 29 29 H 1.09000 * 109.44140 * 179.88664 * 14 13 12 30 30 H 1.09002 * 109.40596 * 59.97878 * 14 13 12 31 31 H 1.09005 * 109.61552 * 185.14330 * 16 15 14 32 32 H 1.09009 * 109.76329 * 64.70669 * 16 15 14 33 33 H 1.09000 * 117.50502 * 359.76298 * 18 17 12 34 34 H 1.09001 * 117.50287 * 144.81157 * 18 17 12 35 35 H 1.08997 * 117.50179 * 215.26053 * 19 17 12 36 36 H 1.08993 * 117.50330 * 0.28476 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 3.3999 -5.9733 1.1048 14 6 4.3486 -7.1741 1.0905 15 8 3.5997 -8.3810 1.2530 16 6 2.6532 -8.6166 0.2043 17 6 1.7360 -7.3950 0.0899 18 6 0.4310 -7.5541 -0.6880 19 6 0.4039 -7.4329 0.8373 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8721 -3.6042 -0.8894 25 1 0.8540 -5.0446 0.8914 26 1 0.8535 -5.0451 -0.8886 27 1 3.9735 -5.0549 0.9804 28 1 2.8648 -5.9434 2.0540 29 1 5.0657 -7.0797 1.9059 30 1 4.8816 -7.2032 0.1401 31 1 2.0589 -9.4996 0.4393 32 1 3.1783 -8.7694 -0.7387 33 1 0.0827 -6.6990 -1.2672 34 1 0.2181 -8.5324 -1.1190 35 1 0.1733 -8.3314 1.4097 36 1 0.0382 -6.4981 1.2620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619814260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:43 Heat of formation + Delta-G solvation = -41.500960 kcal Electronic energy + Delta-G solvation = -15867.116935 eV Core-core repulsion = 13351.059590 eV Total energy + Delta-G solvation = -2516.057345 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23898 -37.93006 -36.54906 -35.09100 -33.00250 -30.11971 -28.86651 -27.16024 -24.31679 -24.10355 -23.26754 -21.77255 -19.88016 -18.50701 -17.75009 -17.29050 -16.60807 -16.51337 -16.23253 -15.78976 -15.07212 -14.74660 -14.39932 -14.27761 -13.84700 -13.65382 -13.26271 -12.86398 -12.79751 -12.48138 -12.28063 -12.20596 -11.91372 -11.64466 -11.44747 -11.36522 -11.18652 -11.14566 -10.58441 -10.53849 -9.21899 -8.22275 -6.33954 1.39021 1.42326 1.50325 2.39017 2.54783 2.70765 3.10892 3.16347 3.56524 3.75509 3.91155 3.94062 4.05751 4.23062 4.31884 4.42329 4.51465 4.63974 4.66370 4.69227 4.70289 4.78428 4.88954 4.95102 5.00286 5.08513 5.15577 5.19123 5.46952 5.67364 5.80907 5.92333 6.03309 6.12475 6.22634 6.82226 7.35554 8.89630 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045394 B = 0.005592 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.671686 B = 5005.613303 C = 5464.730974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.092 4.092 11 C 0.061 3.939 12 N -0.500 5.500 13 C 0.012 3.988 14 C 0.068 3.932 15 O -0.396 6.396 16 C 0.109 3.891 17 C -0.009 4.009 18 C -0.154 4.154 19 C -0.213 4.213 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.012 1.012 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 -16.979 0.686 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.130 4.130 11 C -0.066 4.066 12 N -0.223 5.223 13 C -0.115 4.115 14 C -0.009 4.009 15 O -0.315 6.315 16 C 0.032 3.968 17 C -0.100 4.100 18 C -0.191 4.191 19 C -0.252 4.252 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.006 0.994 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.669 -16.972 0.389 17.898 hybrid contribution -0.686 1.523 0.540 1.756 sum 4.983 -15.448 0.930 16.259 Atomic orbital electron populations 1.70087 1.07873 1.27921 1.51533 1.26002 0.95778 1.03454 0.94584 0.85478 0.78270 0.77923 0.79249 1.19096 1.20746 1.19102 1.21641 0.93545 0.92276 1.50809 0.92142 1.18941 0.94324 0.93092 0.94631 1.21464 0.98136 0.92537 1.00840 1.22186 0.94204 0.90114 1.00093 1.62537 1.16153 1.00349 1.43272 1.22925 0.95569 1.00967 0.92073 1.22716 0.92712 0.82043 1.03432 1.87974 1.53479 1.41725 1.48289 1.22335 0.89171 0.93888 0.91376 1.22762 0.88865 0.92399 1.05935 1.23160 0.97750 1.04417 0.93808 1.23521 1.02443 1.03530 0.95678 0.92711 0.99048 0.99359 0.92776 0.92679 0.95407 0.91188 0.89139 0.95132 0.86390 0.91601 0.86137 0.91042 0.89497 0.85378 0.86798 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.50 4.97 29.84 0.15 1.65 16 10 C -0.09 -3.92 4.70 30.59 0.14 -3.77 16 11 C 0.06 2.24 4.24 86.30 0.37 2.60 16 12 N -0.50 -15.42 4.99 -845.76 -4.22 -19.64 16 13 C 0.01 0.35 5.06 86.26 0.44 0.79 16 14 C 0.07 1.53 6.90 71.99 0.50 2.03 16 15 O -0.40 -9.64 10.84 -148.98 -1.61 -11.26 16 16 C 0.11 2.28 6.73 72.04 0.48 2.77 16 17 C -0.01 -0.22 2.47 3.40 0.01 -0.21 16 18 C -0.15 -3.51 9.63 30.53 0.29 -3.22 16 19 C -0.21 -5.27 9.50 30.54 0.29 -4.98 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 23 H 0.05 2.23 6.36 -2.38 -0.02 2.22 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.03 1.06 6.01 -2.39 -0.01 1.04 16 26 H 0.07 2.59 6.49 -2.38 -0.02 2.57 16 27 H 0.09 2.63 6.32 -2.39 -0.02 2.61 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 1.91 8.07 -2.38 -0.02 1.89 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.09 2.28 6.48 -2.39 -0.02 2.26 16 34 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.30 6.03 -2.39 -0.01 2.28 16 Total: -1.00 -65.87 283.85 0.88 -64.99 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.04 Total: 9.88 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.36 Total: -33.26 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.94 Total: -76.98 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.61 Total: -11.26 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.87 0.88 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619814260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.487 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds