Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.48568 * 110.99379 * 69.87663 * 12 11 10 14 14 C 1.54382 * 104.58877 * 159.04013 * 13 12 11 15 15 H 1.09001 * 117.60239 * 115.28263 * 14 13 12 16 16 C 1.53000 * 118.13034 * 270.80024 * 14 13 12 17 17 C 1.54261 * 105.06314 * 336.14764 * 14 13 12 18 18 C 1.53000 * 121.78730 * 137.87489 * 17 14 13 19 19 O 1.42897 * 109.47191 * 179.97438 * 18 17 14 20 20 C 1.48560 * 111.00030 * 185.29160 * 12 11 10 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 25 25 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 26 26 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 27 27 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 28 28 H 1.08995 * 110.41269 * 277.81704 * 13 12 11 29 29 H 1.08999 * 110.41362 * 40.26473 * 13 12 11 30 30 H 1.08996 * 117.44625 * 199.32007 * 16 14 13 31 31 H 1.09004 * 117.44166 * 344.07217 * 16 14 13 32 32 H 1.09000 * 109.47210 * 299.99916 * 18 17 14 33 33 H 1.08997 * 109.47054 * 59.99712 * 18 17 14 34 34 H 0.96702 * 114.00283 * 179.97438 * 19 18 17 35 35 H 1.08999 * 110.41370 * 319.74631 * 20 12 11 36 36 H 1.08998 * 110.40768 * 82.18547 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 3.1446 -6.1980 1.3024 14 6 3.6645 -7.6506 1.3576 15 1 4.7441 -7.8010 1.3591 16 6 2.7534 -8.7203 1.9631 17 6 2.7347 -8.4451 0.4174 18 6 3.2765 -9.5004 -0.5489 19 8 2.1942 -10.0698 -1.2881 20 6 1.7313 -7.4057 -0.1267 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8721 -3.6042 -0.8894 25 1 2.8721 -3.6043 0.8905 26 1 0.8541 -5.0446 0.8913 27 1 0.8535 -5.0451 -0.8886 28 1 3.9769 -5.4949 1.3336 29 1 2.4555 -6.0094 2.1256 30 1 3.2195 -9.6482 2.2945 31 1 1.9076 -8.3802 2.5606 32 1 3.9818 -9.0348 -1.2373 33 1 3.7826 -10.2838 0.0151 34 1 2.4646 -10.7481 -1.9221 35 1 0.8209 -7.4061 0.4727 36 1 1.4995 -7.6119 -1.1717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782618236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = -47.847201 kcal Electronic energy + Delta-G solvation = -15344.181719 eV Core-core repulsion = 12827.849181 eV Total energy + Delta-G solvation = -2516.332538 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01420 -37.63837 -36.54980 -35.04703 -32.83995 -29.90988 -28.73832 -26.97265 -25.79447 -23.25520 -22.01167 -21.46388 -20.00132 -18.47955 -18.15279 -17.06754 -16.52345 -16.37203 -15.90806 -15.47400 -15.14513 -14.58566 -14.37056 -13.96037 -13.78169 -13.44580 -13.26565 -13.01462 -12.62789 -12.55246 -12.27132 -12.13333 -12.05450 -11.49595 -11.39678 -11.22320 -11.13168 -11.09260 -10.55857 -10.42909 -9.46514 -8.20672 -6.32313 1.39647 1.43367 1.51344 2.40618 2.45933 2.95295 3.12215 3.20179 3.52072 3.78135 3.91148 4.11371 4.21283 4.23210 4.31012 4.41374 4.54245 4.62051 4.66336 4.77159 4.83332 4.89565 4.92526 5.01896 5.03634 5.07914 5.19348 5.24613 5.49576 5.69215 5.83099 5.84858 5.99129 6.25150 6.83808 6.97641 7.36961 8.91316 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.057873 B = 0.004495 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.703529 B = 6227.201753 C = 6386.552622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.085 4.085 11 C 0.057 3.943 12 N -0.519 5.519 13 C 0.052 3.948 14 C -0.143 4.143 15 H 0.136 0.864 16 C -0.132 4.132 17 C -0.154 4.154 18 C 0.131 3.869 19 O -0.590 6.590 20 C 0.073 3.927 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.010 1.010 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.398 0.602 35 H 0.034 0.966 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -20.295 1.720 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.123 4.123 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.075 4.075 14 C -0.161 4.161 15 H 0.154 0.846 16 C -0.169 4.169 17 C -0.155 4.155 18 C 0.053 3.947 19 O -0.398 6.398 20 C -0.054 4.054 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.147 0.853 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.052 0.948 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.032 -19.650 1.610 21.289 hybrid contribution -0.384 0.732 0.239 0.860 sum 7.649 -18.918 1.849 20.489 Atomic orbital electron populations 1.70098 1.07873 1.27900 1.51606 1.26013 0.95794 1.03466 0.94592 0.85464 0.78255 0.77864 0.79249 1.19141 1.20695 1.19053 1.21645 0.93527 0.92310 1.50743 0.92213 1.18978 0.94392 0.93164 0.94688 1.21326 0.97913 0.92397 1.00666 1.22182 0.93859 0.91124 0.99978 1.65587 1.24954 1.02171 1.31551 1.22734 0.98514 0.96259 0.90007 1.23575 0.98739 0.90319 1.03497 0.84613 1.23957 1.01093 0.99896 0.91908 1.23137 1.01489 0.99172 0.91733 1.21332 0.87659 0.93335 0.92345 1.86447 1.35734 1.59743 1.57898 1.22391 0.94405 0.87492 1.01148 0.92719 0.99072 0.99182 0.92962 0.93136 0.95525 0.91666 0.89709 0.94246 0.85253 0.89390 0.92919 0.91042 0.75196 0.94769 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -32.13 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.77 5.21 30.60 0.16 -3.62 16 11 C 0.06 2.17 4.81 86.30 0.41 2.58 16 12 N -0.52 -16.98 5.37 -881.48 -4.73 -21.72 16 13 C 0.05 1.48 5.53 86.45 0.48 1.96 16 14 C -0.14 -3.02 6.88 -9.90 -0.07 -3.09 16 15 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.13 -2.41 10.09 32.00 0.32 -2.08 16 17 C -0.15 -3.46 2.86 -49.88 -0.14 -3.60 16 18 C 0.13 2.29 7.36 71.98 0.53 2.82 16 19 O -0.59 -11.05 13.08 -148.98 -1.95 -13.00 16 20 C 0.07 2.12 5.96 86.45 0.51 2.64 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 24 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 2.17 7.26 -2.39 -0.02 2.15 16 26 H 0.03 1.03 7.88 -2.39 -0.02 1.01 16 27 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 28 H 0.08 2.43 7.76 -2.39 -0.02 2.41 16 29 H 0.04 1.16 7.82 -2.39 -0.02 1.14 16 30 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.40 3.39 9.12 -74.06 -0.68 2.72 16 35 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 36 H 0.08 2.43 7.67 -2.39 -0.02 2.41 16 Total: -1.00 -69.49 295.58 -0.95 -70.44 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.37 Total: 7.46 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 3.05 Total: -32.34 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -4.45 Total: -79.75 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.95 Total: -13.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.49 -0.95 -70.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782618236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.592 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds