Wall clock time and date at job start Sun Mar 29 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47208 * 2 1 4 4 C 1.50706 * 109.47235 * 120.00076 * 2 1 3 5 5 N 1.27954 * 120.00125 * 239.99672 * 4 2 1 6 6 O 1.41599 * 119.99889 * 180.02562 * 5 4 2 7 7 C 1.42903 * 113.99636 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46726 * 180.02562 * 7 6 5 9 9 C 1.53003 * 117.49371 * 243.61887 * 8 7 6 10 10 C 1.53001 * 117.49608 * 174.99962 * 8 7 6 11 11 C 1.52999 * 109.47071 * 240.00214 * 2 1 3 12 12 C 1.50697 * 109.47105 * 60.00025 * 11 2 1 13 13 H 1.08001 * 120.00297 * 359.97438 * 12 11 2 14 14 C 1.37879 * 120.00128 * 180.02562 * 12 11 2 15 15 N 1.31514 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99917 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47489 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47032 * 120.00154 * 16 14 12 19 19 H 1.48502 * 109.46873 * 239.99888 * 16 14 12 20 20 H 1.09001 * 109.47150 * 299.99384 * 1 2 3 21 21 H 1.08994 * 109.47110 * 59.99773 * 1 2 3 22 22 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47505 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47524 * 300.00589 * 3 2 1 25 25 H 1.09007 * 109.47222 * 60.00045 * 3 2 1 26 26 H 1.08000 * 119.99637 * 60.00494 * 4 2 1 27 27 H 1.09002 * 109.47382 * 59.99834 * 7 6 5 28 28 H 1.09001 * 109.46938 * 299.99820 * 7 6 5 29 29 H 1.08995 * 115.55630 * 29.32572 * 8 7 6 30 30 H 1.08998 * 117.50656 * 0.02562 * 9 8 7 31 31 H 1.09001 * 117.49674 * 145.02590 * 9 8 7 32 32 H 1.09003 * 117.49710 * 214.97494 * 10 8 7 33 33 H 1.08998 * 117.50185 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47529 * 179.97438 * 11 2 1 35 35 H 1.09004 * 109.47044 * 300.00092 * 11 2 1 36 36 H 0.96997 * 119.99886 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7680 -0.0887 2.0727 6 8 3.2405 -0.7564 3.2286 7 6 4.0492 0.0577 4.0803 8 6 4.5017 -0.7624 5.2900 9 6 4.0166 -0.3126 6.6697 10 6 5.4774 -0.1020 6.2662 11 6 2.0400 -0.7212 -1.2493 12 6 1.5376 -0.0108 -2.4797 13 1 0.9164 0.8671 -2.3806 14 6 1.8703 -0.4821 -3.7320 15 7 2.6263 -1.5513 -3.8527 16 14 1.2470 0.3982 -5.2571 17 1 0.4216 1.5646 -4.8530 18 1 2.4016 0.8648 -6.0660 19 1 0.4217 -0.5354 -6.0650 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.7715 -1.7445 1.4013 27 1 3.4698 0.9166 4.4192 28 1 4.9234 0.4039 3.5289 29 1 4.6091 -1.8334 5.1185 30 1 3.3748 0.5672 6.7155 31 1 3.8048 -1.0879 7.4060 32 1 6.2264 -0.7386 6.7370 33 1 5.7972 0.9166 6.0463 34 1 3.1300 -0.7208 -1.2496 35 1 1.6766 -1.7489 -1.2493 36 1 2.8607 -1.8827 -4.7337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814243568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:23 Heat of formation + Delta-G solvation = 1.234702 kcal Electronic energy + Delta-G solvation = -15115.112585 eV Core-core repulsion = 12600.908398 eV Total energy + Delta-G solvation = -2514.204187 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40400 -38.72039 -37.20783 -34.75186 -33.11468 -29.06777 -28.03392 -27.78743 -25.72160 -23.33444 -23.15436 -21.68251 -19.36622 -18.50535 -18.28764 -17.05026 -16.57956 -16.30089 -15.62501 -15.09026 -14.95512 -14.82351 -14.41723 -13.98373 -13.23986 -12.95822 -12.75377 -12.66983 -12.58906 -12.45669 -12.37814 -12.32947 -12.04665 -11.69163 -11.45541 -11.34198 -11.09538 -10.95711 -10.71415 -10.50066 -10.30726 -8.12348 -6.19912 1.08974 1.45464 1.47012 1.58702 1.68593 2.47739 2.82970 3.22946 3.72955 3.86439 3.89326 3.98199 4.21390 4.27466 4.32963 4.41977 4.55358 4.63039 4.74283 4.79702 4.97099 4.98015 5.07133 5.12566 5.15321 5.21507 5.32499 5.40638 5.49215 5.54728 5.56535 5.76466 5.90083 6.29670 6.61891 6.94046 7.47818 9.00497 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.056825 B = 0.004496 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.623314 B = 6225.983870 C = 6376.579457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.012 4.012 3 C -0.111 4.111 4 C 0.133 3.867 5 N -0.357 5.357 6 O -0.274 6.274 7 C 0.107 3.893 8 C -0.177 4.177 9 C -0.171 4.171 10 C -0.155 4.155 11 C 0.046 3.954 12 C -0.514 4.514 13 H 0.075 0.925 14 C -0.002 4.002 15 N -0.938 5.938 16 Si 0.959 3.041 17 H -0.256 1.256 18 H -0.286 1.286 19 H -0.283 1.283 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.104 0.896 34 H -0.016 1.016 35 H 0.000 1.000 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 3.974 16.358 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.013 4.013 3 C -0.169 4.169 4 C -0.081 4.081 5 N -0.103 5.103 6 O -0.286 6.286 7 C 0.031 3.969 8 C -0.196 4.196 9 C -0.208 4.208 10 C -0.192 4.192 11 C 0.007 3.993 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.199 4.199 15 N -0.579 5.579 16 Si 0.785 3.215 17 H -0.180 1.180 18 H -0.212 1.212 19 H -0.209 1.209 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.002 0.998 35 H 0.019 0.981 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.810 4.495 16.600 17.217 hybrid contribution -0.081 -0.819 -1.093 1.368 sum 0.729 3.676 15.507 15.954 Atomic orbital electron populations 1.21659 0.91574 1.02250 1.02103 1.19713 0.97064 0.95617 0.88937 1.21537 0.99767 0.94457 1.01101 1.26497 0.90306 0.98679 0.92601 1.76305 1.12692 1.25214 0.96117 1.89784 1.68993 1.37975 1.31842 1.21965 0.93031 0.93092 0.88856 1.22103 1.07375 1.00188 0.89941 1.23188 0.97598 1.03743 0.96223 1.23099 0.93131 1.02502 1.00444 1.18975 0.94239 0.94779 0.91263 1.21592 1.30585 1.12216 0.90783 0.90659 1.25909 0.95567 0.95810 1.02608 1.70119 1.38705 1.24951 1.24111 0.85479 0.78019 0.78884 0.79168 1.18000 1.21250 1.20871 0.91953 0.91229 0.92537 0.94726 0.92060 0.92436 0.86966 0.92361 0.93034 0.87675 0.88292 0.87346 0.86743 0.87798 0.99803 0.98123 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.20 71.98 0.59 -3.44 16 2 C -0.01 -0.47 0.75 -52.93 -0.04 -0.51 16 3 C -0.11 -4.25 7.45 71.98 0.54 -3.71 16 4 C 0.13 5.07 9.72 88.68 0.86 5.93 16 5 N -0.36 -13.66 10.03 -50.49 -0.51 -14.17 16 6 O -0.27 -9.85 11.35 -38.78 -0.44 -10.29 16 7 C 0.11 2.99 6.68 71.98 0.48 3.47 16 8 C -0.18 -3.87 6.06 -10.79 -0.07 -3.93 16 9 C -0.17 -2.85 10.18 30.60 0.31 -2.54 16 10 C -0.15 -2.42 10.25 30.60 0.31 -2.11 16 11 C 0.05 2.30 4.02 29.85 0.12 2.42 16 12 C -0.51 -27.20 7.65 25.60 0.20 -27.01 16 13 H 0.08 3.73 5.68 -2.91 -0.02 3.72 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 15 N -0.94 -56.13 13.29 21.45 0.28 -55.85 16 16 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.07 2.48 6.62 -2.39 -0.02 2.46 16 22 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 24 H 0.06 2.37 6.62 -2.39 -0.02 2.35 16 25 H 0.06 1.94 8.06 -2.38 -0.02 1.92 16 26 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.06 1.54 7.88 -2.39 -0.02 1.52 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -62.62 302.53 6.16 -56.47 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.03 Total: 9.85 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.77 Total: -31.07 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.22 Total: -70.02 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.44 Total: -10.29 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.62 6.16 -56.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814243568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.700 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds