Wall clock time and date at job start Sun Mar 29 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47021 * 270.00051 * 3 2 1 5 5 H 1.48495 * 109.46985 * 29.99990 * 3 2 1 6 6 H 1.48497 * 109.47174 * 150.00156 * 3 2 1 7 7 C 1.37882 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47061 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.46934 * 179.97438 * 10 9 7 12 12 C 1.46904 * 110.99940 * 180.02562 * 11 10 9 13 13 C 1.56269 * 113.58268 * 296.99549 * 12 11 10 14 14 C 1.54849 * 104.84672 * 213.20085 * 13 12 11 15 15 C 1.54850 * 102.74129 * 37.99337 * 14 13 12 16 16 C 1.54140 * 104.34917 * 321.99592 * 15 14 13 17 17 H 1.08996 * 110.98304 * 145.30998 * 16 15 14 18 18 O 1.43660 * 109.21299 * 267.97120 * 16 15 14 19 19 C 1.44364 * 106.95839 * 88.81884 * 18 16 15 20 20 C 1.54777 * 112.29991 * 61.01220 * 12 11 10 21 21 H 0.97001 * 119.99736 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47474 * 59.99836 * 9 7 2 23 23 H 1.09001 * 109.46816 * 299.99634 * 9 7 2 24 24 H 1.09001 * 109.46648 * 59.99843 * 10 9 7 25 25 H 1.08997 * 109.46769 * 300.00234 * 10 9 7 26 26 H 1.00899 * 111.00329 * 56.05162 * 11 10 9 27 27 H 1.09003 * 110.44009 * 94.19293 * 13 12 11 28 28 H 1.09000 * 110.05893 * 332.01579 * 13 12 11 29 29 H 1.09003 * 110.76275 * 279.68111 * 14 13 12 30 30 H 1.09004 * 110.91882 * 156.38058 * 14 13 12 31 31 H 1.08998 * 110.45737 * 203.27458 * 15 14 13 32 32 H 1.09003 * 110.56119 * 80.76288 * 15 14 13 33 33 H 1.09008 * 110.62191 * 281.97889 * 19 18 16 34 34 H 1.09002 * 110.62028 * 158.97488 * 19 18 16 35 35 H 1.09002 * 110.85133 * 24.06863 * 20 12 11 36 36 H 1.09001 * 110.85125 * 260.64415 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 2.4351 -6.0760 -0.0037 13 6 3.3338 -6.1523 -1.2798 14 6 3.5399 -7.6665 -1.5299 15 6 2.1587 -8.2640 -1.1651 16 6 1.6960 -7.4407 0.0530 17 1 0.6151 -7.3008 0.0417 18 8 2.1164 -8.1014 1.2575 19 6 3.4376 -7.6096 1.5683 20 6 3.3439 -6.0962 1.2490 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8718 -3.6052 0.8873 25 1 2.8718 -3.6036 -0.8926 26 1 0.8740 -4.9839 -0.7845 27 1 4.2906 -5.6616 -1.1014 28 1 2.8223 -5.6924 -2.1253 29 1 4.3172 -8.0637 -0.8771 30 1 3.7802 -7.8590 -2.5756 31 1 2.2573 -9.3163 -0.8986 32 1 1.4596 -8.1454 -1.9929 33 1 4.1846 -8.0899 0.9361 34 1 3.6673 -7.7661 2.6223 35 1 2.8808 -5.5537 2.0732 36 1 4.3278 -5.6861 1.0211 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872311211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:52 Heat of formation + Delta-G solvation = -81.297050 kcal Electronic energy + Delta-G solvation = -16042.577613 eV Core-core repulsion = 13524.794580 eV Total energy + Delta-G solvation = -2517.783033 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58556 -37.30574 -35.67490 -34.60236 -32.27749 -30.83812 -28.60803 -27.56473 -25.72236 -23.43293 -22.45933 -21.26691 -20.41032 -18.57025 -17.92022 -17.13656 -16.45525 -16.19098 -15.87322 -15.12652 -15.01755 -14.69942 -14.59065 -14.25280 -13.55430 -13.11223 -12.97228 -12.91296 -12.68514 -12.46205 -12.36552 -12.23528 -12.01343 -11.82349 -11.67689 -11.40156 -11.34100 -11.18263 -10.57700 -10.44734 -9.29508 -8.21498 -6.33243 1.39649 1.41362 1.52485 2.39446 2.92673 3.11757 3.12433 3.45824 3.73344 3.88067 4.07860 4.09188 4.26734 4.33566 4.47747 4.52940 4.57685 4.67964 4.70406 4.79074 4.87040 4.97084 4.99285 5.05348 5.12204 5.15231 5.17243 5.39092 5.44138 5.65043 5.77736 5.96137 6.13001 6.27051 6.50463 6.84039 7.36238 8.90782 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049425 B = 0.005561 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.383416 B = 5033.701357 C = 5051.675535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.091 3.909 11 N -0.677 5.677 12 C 0.078 3.922 13 C -0.145 4.145 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.078 3.922 17 H 0.090 0.910 18 O -0.389 6.389 19 C 0.050 3.950 20 C -0.144 4.144 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.057 0.943 25 H 0.023 0.977 26 H 0.340 0.660 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.630 -15.993 -2.134 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.038 4.038 11 N -0.307 5.307 12 C -0.014 4.014 13 C -0.185 4.185 14 C -0.153 4.153 15 C -0.176 4.176 16 C 0.020 3.980 17 H 0.108 0.892 18 O -0.308 6.308 19 C -0.027 4.027 20 C -0.182 4.182 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.158 0.842 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.265 -16.042 -1.310 18.093 hybrid contribution 0.278 1.414 -0.920 1.710 sum 8.543 -14.627 -2.230 17.086 Atomic orbital electron populations 1.70115 1.07879 1.27825 1.51412 1.25990 0.95758 1.03427 0.94591 0.85413 0.78628 0.78245 0.78551 1.19625 1.20757 1.18682 1.21592 0.93514 0.92174 1.50943 0.92108 1.18933 0.94350 0.92444 0.94938 1.21703 0.95532 0.87713 0.98837 1.60573 1.19122 1.01402 1.49593 1.23356 0.91859 0.90752 0.95470 1.23345 0.99821 0.98244 0.97051 1.22490 0.97071 0.93249 1.02459 1.22813 0.97771 1.00060 0.96964 1.23424 0.99198 0.89810 0.85557 0.89176 1.88822 1.33065 1.65531 1.43353 1.23710 0.85199 0.91488 1.02255 1.23190 0.99666 0.98108 0.97240 0.92732 0.99050 0.99021 0.92481 0.95873 0.84168 0.91271 0.92252 0.90334 0.89801 0.89748 0.89919 0.90089 0.87926 0.91906 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.67 5.23 29.85 0.16 1.82 16 10 C 0.09 3.83 5.21 86.31 0.45 4.28 16 11 N -0.68 -24.48 6.29 -457.76 -2.88 -27.36 16 12 C 0.08 2.21 0.98 6.06 0.01 2.22 16 13 C -0.14 -3.50 5.06 32.36 0.16 -3.33 16 14 C -0.12 -2.11 6.40 31.86 0.20 -1.91 16 15 C -0.14 -2.75 6.43 31.61 0.20 -2.55 16 16 C 0.08 2.06 4.20 31.77 0.13 2.20 16 17 H 0.09 2.55 8.06 -2.39 -0.02 2.53 16 18 O -0.39 -10.82 11.13 -148.98 -1.66 -12.48 16 19 C 0.05 1.11 7.23 72.65 0.53 1.64 16 20 C -0.14 -3.89 5.18 31.87 0.17 -3.73 16 21 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.06 2.42 7.16 -2.39 -0.02 2.41 16 25 H 0.02 0.95 7.42 -2.39 -0.02 0.93 16 26 H 0.34 11.94 8.81 -89.69 -0.79 11.15 16 27 H 0.07 1.66 7.53 -2.39 -0.02 1.64 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.29 6.20 -2.39 -0.01 1.28 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.46 6.06 -2.38 -0.01 1.45 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 36 H 0.09 2.12 7.49 -2.39 -0.02 2.10 16 Total: -1.00 -65.29 281.73 0.74 -64.55 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.26 Total: 15.96 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 2.70 Total: -29.91 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.59 Total: -84.53 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.66 Total: -12.48 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.29 0.74 -64.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872311211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.744 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds