Wall clock time and date at job start Sun Mar 29 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00014 * 3 2 1 5 5 H 1.48495 * 109.46915 * 30.00174 * 3 2 1 6 6 H 1.48501 * 109.46889 * 149.99963 * 3 2 1 7 7 C 1.38820 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99406 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99627 * 187.52284 * 9 7 2 11 11 C 1.53000 * 112.84980 * 65.61318 * 10 9 7 12 12 H 1.09005 * 109.47866 * 170.31247 * 11 10 9 13 13 C 1.53086 * 109.48494 * 50.27522 * 11 10 9 14 14 C 1.53180 * 109.21888 * 182.44169 * 13 11 10 15 15 C 1.53181 * 109.03126 * 56.88650 * 14 13 11 16 16 C 1.53093 * 109.21295 * 303.11504 * 15 14 13 17 17 O 1.42899 * 109.41563 * 57.57785 * 16 15 14 18 18 C 1.53777 * 113.61626 * 196.80683 * 10 9 7 19 19 C 1.53954 * 87.01953 * 89.22921 * 18 10 9 20 20 C 1.53778 * 87.11056 * 25.36487 * 19 18 10 21 21 H 0.96998 * 120.00089 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00552 * 7.51941 * 9 7 2 23 23 H 1.09006 * 109.52309 * 302.31501 * 13 11 10 24 24 H 1.09000 * 109.52378 * 62.50064 * 13 11 10 25 25 H 1.09000 * 109.49938 * 297.05229 * 14 13 11 26 26 H 1.09003 * 109.59842 * 176.78007 * 14 13 11 27 27 H 1.08996 * 109.52301 * 183.17651 * 15 14 13 28 28 H 1.08995 * 109.52611 * 63.04965 * 15 14 13 29 29 H 1.09000 * 109.48148 * 177.56312 * 16 15 14 30 30 H 1.09005 * 109.47800 * 297.59316 * 16 15 14 31 31 H 1.09000 * 113.62252 * 203.75228 * 18 10 9 32 32 H 1.09000 * 113.61476 * 334.65197 * 18 10 9 33 33 H 1.09004 * 113.54032 * 270.81224 * 19 18 10 34 34 H 1.09002 * 113.74044 * 139.94869 * 19 18 10 35 35 H 1.09000 * 113.61658 * 220.09043 * 20 19 18 36 36 H 1.08997 * 113.61452 * 89.18676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0485 -3.6513 0.1672 11 6 2.6976 -3.7869 1.5460 12 1 3.0692 -4.8036 1.6744 13 6 1.6613 -3.4811 2.6306 14 6 2.3323 -3.5589 4.0054 15 6 3.5154 -2.5866 4.0395 16 6 4.4802 -2.9269 2.9005 17 8 3.7842 -2.8651 1.6540 18 6 1.2358 -4.8866 -0.2552 19 6 1.8129 -4.6835 -1.6679 20 6 3.0007 -3.9743 -0.9963 21 1 -0.4850 0.8400 0.0004 22 1 0.3618 -2.3917 -0.1098 23 1 1.2596 -2.4792 2.4785 24 1 0.8529 -4.2104 2.5780 25 1 2.6894 -4.5740 4.1790 26 1 1.6140 -3.2864 4.7787 27 1 4.0332 -2.6762 4.9944 28 1 3.1522 -1.5663 3.9164 29 1 5.3020 -2.2108 2.8940 30 1 4.8751 -3.9323 3.0469 31 1 1.5644 -5.8097 0.2222 32 1 0.1572 -4.7401 -0.1979 33 1 1.2095 -4.0266 -2.2944 34 1 2.0853 -5.6127 -2.1684 35 1 3.3448 -3.0924 -1.5365 36 1 3.8128 -4.6475 -0.7219 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879730370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:42 Heat of formation + Delta-G solvation = -22.608925 kcal Electronic energy + Delta-G solvation = -16869.518755 eV Core-core repulsion = 14354.280630 eV Total energy + Delta-G solvation = -2515.238125 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42244 -37.41634 -33.12037 -32.98077 -30.78203 -29.41576 -25.62460 -25.02303 -23.64804 -23.11582 -21.45427 -19.52647 -18.07490 -16.92465 -15.79385 -15.43522 -14.67391 -14.44571 -14.03935 -13.95225 -13.56277 -13.11849 -12.64313 -12.34753 -12.06537 -11.73375 -11.17335 -10.90454 -10.80398 -10.71072 -10.62875 -10.45870 -10.24996 -10.04218 -9.99284 -9.71790 -9.40340 -9.28283 -8.81045 -8.51578 -6.83316 -5.63554 -2.90840 3.51830 3.57653 3.60738 4.41925 4.70078 5.21552 5.25230 5.33306 5.34842 5.45264 5.51230 5.63353 5.69973 5.71952 5.77838 5.97031 6.02641 6.04772 6.16965 6.22219 6.28645 6.34949 6.41835 6.45093 6.49340 6.57356 6.72134 6.92067 7.04146 7.19378 7.22141 8.02729 8.05463 8.57135 9.67287 10.20853 10.57262 11.59473 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.013371 C = 0.009776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.835758 B = 2093.585859 C = 2863.354313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.020 4.020 3 Si 0.901 3.099 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.207 4.207 8 H 0.080 0.920 9 N -0.695 5.695 10 C 0.195 3.805 11 C 0.097 3.903 12 H 0.034 0.966 13 C -0.142 4.142 14 C -0.119 4.119 15 C -0.154 4.154 16 C 0.060 3.940 17 O -0.352 6.352 18 C -0.140 4.140 19 C -0.132 4.132 20 C -0.148 4.148 21 H 0.251 0.749 22 H 0.384 0.616 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -9.781 4.566 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.214 4.214 3 Si 0.733 3.267 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.334 5.334 10 C 0.102 3.898 11 C 0.037 3.963 12 H 0.052 0.948 13 C -0.180 4.180 14 C -0.156 4.156 15 C -0.191 4.191 16 C -0.017 4.017 17 O -0.270 6.270 18 C -0.178 4.178 19 C -0.169 4.169 20 C -0.187 4.187 21 H 0.061 0.939 22 H 0.218 0.782 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.392 -9.483 4.437 11.777 hybrid contribution 0.091 0.807 0.399 0.905 sum 5.483 -8.676 4.836 11.345 Atomic orbital electron populations 1.69665 1.05012 1.25251 1.59112 1.24717 0.95384 0.97435 1.03876 0.86252 0.78836 0.84274 0.77334 1.22105 1.22185 1.20726 1.19292 0.91508 0.83155 1.39833 0.90248 1.42069 1.06315 0.99442 1.85607 1.20566 0.91985 0.87307 0.89957 1.22686 0.86582 0.89901 0.97176 0.94780 1.22064 0.98104 1.04640 0.93211 1.21569 0.97433 0.98305 0.98328 1.22143 0.97453 1.01117 0.98424 1.22431 0.94337 0.99485 0.85494 1.88146 1.45248 1.60515 1.33084 1.23150 0.99898 0.97530 0.97234 1.22713 0.98892 0.99483 0.95836 1.23251 0.96114 0.99984 0.99385 0.93889 0.78157 0.88660 0.92489 0.93130 0.92379 0.92272 0.90769 0.89946 0.94710 0.90711 0.91521 0.90115 0.92919 0.90957 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.40 13.07 55.49 0.73 -27.68 16 2 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 3 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.21 -5.67 8.70 -15.06 -0.13 -5.80 16 8 H 0.08 2.24 7.00 -52.49 -0.37 1.87 16 9 N -0.69 -17.02 4.21 -46.48 -0.20 -17.21 16 10 C 0.20 3.90 0.64 -131.01 -0.08 3.82 16 11 C 0.10 1.83 2.15 -26.69 -0.06 1.78 16 12 H 0.03 0.59 7.98 -51.93 -0.41 0.17 16 13 C -0.14 -2.64 5.20 -26.59 -0.14 -2.78 16 14 C -0.12 -1.84 6.03 -26.54 -0.16 -2.01 16 15 C -0.15 -2.40 6.13 -26.59 -0.16 -2.56 16 16 C 0.06 0.98 6.84 37.21 0.25 1.23 16 17 O -0.35 -7.19 8.69 -35.23 -0.31 -7.50 16 18 C -0.14 -2.34 7.36 -25.83 -0.19 -2.53 16 19 C -0.13 -2.21 8.00 -25.83 -0.21 -2.42 16 20 C -0.15 -2.78 7.11 -25.92 -0.18 -2.96 16 21 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.38 10.05 7.88 -40.82 -0.32 9.73 16 23 H 0.09 2.18 7.45 -51.93 -0.39 1.79 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.08 7.99 -51.93 -0.41 0.66 16 32 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.53 7.85 -51.93 -0.41 1.13 16 36 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 284.45 15.07 4.29 4.29 Total: -1.00 -29.63 284.45 -7.76 -37.40 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.09 Total: 7.58 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.16 Total: -14.90 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.53 Total: -44.89 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.31 Total: -7.50 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.63 -7.76 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879730370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds