Wall clock time and date at job start Sun Mar 29 2020 21:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00250 * 2 1 4 4 H 1.48509 * 109.47149 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46983 * 29.99498 * 3 2 1 6 6 H 1.48499 * 109.47325 * 149.99784 * 3 2 1 7 7 C 1.37876 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99880 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.47317 * 329.01687 * 11 10 9 13 13 C 1.54955 * 110.53532 * 206.35838 * 11 10 9 14 14 C 1.55045 * 102.10208 * 220.52330 * 13 11 10 15 15 O 1.44519 * 103.72962 * 36.60941 * 14 13 11 16 16 C 1.43279 * 106.76907 * 320.76945 * 15 14 13 17 17 C 1.53738 * 110.52633 * 146.41369 * 16 15 14 18 18 C 1.55016 * 104.06529 * 97.20759 * 17 16 15 19 19 C 1.54940 * 102.81396 * 37.49064 * 18 17 16 20 20 C 1.53351 * 110.52878 * 264.86211 * 16 15 14 21 21 H 0.97002 * 119.99667 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47390 * 60.00096 * 9 7 2 23 23 H 1.09002 * 109.47049 * 299.99416 * 9 7 2 24 24 H 1.00898 * 111.00303 * 303.95326 * 10 9 7 25 25 H 1.08991 * 110.90485 * 102.31890 * 13 11 10 26 26 H 1.09000 * 110.90046 * 338.72416 * 13 11 10 27 27 H 1.08996 * 110.59557 * 155.21851 * 14 13 11 28 28 H 1.09003 * 110.59943 * 278.00647 * 14 13 11 29 29 H 1.08997 * 110.50722 * 215.85091 * 17 16 15 30 30 H 1.09000 * 110.51044 * 338.56183 * 17 16 15 31 31 H 1.09004 * 110.74090 * 279.16062 * 18 17 16 32 32 H 1.08994 * 110.90340 * 155.89856 * 18 17 16 33 33 H 1.09002 * 110.48166 * 203.67425 * 19 18 17 34 34 H 1.08999 * 110.59073 * 81.09723 * 19 18 17 35 35 H 1.09002 * 110.06997 * 358.61520 * 20 16 15 36 36 H 1.08993 * 110.06868 * 120.08989 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0024 12 1 0.5538 -4.8245 0.5276 13 6 2.3889 -6.0043 0.6479 14 6 2.1263 -7.2197 -0.2783 15 8 2.0119 -6.6306 -1.5930 16 6 1.2894 -5.4035 -1.4347 17 6 1.7862 -4.3519 -2.4402 18 6 0.7709 -4.4384 -3.6084 19 6 -0.5734 -4.6828 -2.8778 20 6 -0.2041 -5.6197 -1.7074 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8411 -3.5491 -0.7791 25 1 2.0651 -6.2147 1.6671 26 1 3.4407 -5.7190 0.6265 27 1 2.9631 -7.9172 -0.2420 28 1 1.1989 -7.7204 -0.0003 29 1 1.7698 -3.3581 -1.9928 30 1 2.7895 -4.5992 -2.7870 31 1 1.0100 -5.2738 -4.2666 32 1 0.7418 -3.5038 -4.1683 33 1 -1.2869 -5.1677 -3.5441 34 1 -0.9812 -3.7446 -2.5014 35 1 -0.3869 -6.6573 -1.9868 36 1 -0.7868 -5.3625 -0.8230 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885695860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:40 Heat of formation + Delta-G solvation = -45.045218 kcal Electronic energy + Delta-G solvation = -16569.753791 eV Core-core repulsion = 14053.542755 eV Total energy + Delta-G solvation = -2516.211035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25021 -35.89070 -34.84723 -32.53105 -30.46183 -28.46395 -28.22166 -25.89399 -23.74189 -21.64282 -21.15429 -20.26216 -19.03930 -16.70701 -15.87112 -15.77628 -15.33810 -14.64684 -14.35917 -13.85867 -13.59303 -13.00066 -12.78787 -12.45947 -11.92343 -11.62583 -11.41667 -11.14046 -10.94251 -10.88473 -10.74278 -10.67816 -10.59890 -10.32848 -10.21196 -10.11425 -9.88482 -9.34937 -9.17043 -8.50053 -7.29058 -6.05730 -4.07836 3.30350 3.36784 3.41271 4.14339 4.40937 4.81100 4.83794 5.09800 5.15084 5.26877 5.30707 5.38031 5.47291 5.66258 5.77078 5.78371 5.91048 5.97690 6.04596 6.08493 6.20414 6.25154 6.30015 6.37101 6.40959 6.48936 6.58888 6.71131 7.23943 7.30959 7.40075 7.76070 8.09696 8.35248 8.56274 9.01223 9.57379 11.04983 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.008177 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.511728 B = 3423.499127 C = 3838.564047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.682 5.682 11 C 0.068 3.932 12 H 0.084 0.916 13 C -0.146 4.146 14 C 0.043 3.957 15 O -0.368 6.368 16 C 0.075 3.925 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.133 4.133 21 H 0.261 0.739 22 H -0.004 1.004 23 H 0.027 0.973 24 H 0.337 0.663 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -11.421 -3.200 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.315 5.315 11 C -0.044 4.044 12 H 0.102 0.898 13 C -0.184 4.184 14 C -0.034 4.034 15 O -0.287 6.287 16 C 0.033 3.967 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.159 0.841 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.891 -11.343 -2.700 11.694 hybrid contribution -0.106 0.894 -0.632 1.100 sum 0.786 -10.449 -3.332 10.995 Atomic orbital electron populations 1.69960 1.06025 1.26786 1.50723 1.24966 0.94863 0.99297 0.95269 0.86509 0.79839 0.83088 0.78055 1.20705 1.21251 1.19784 1.21176 0.93511 0.90233 1.50589 0.92014 1.19653 0.90757 0.87165 0.96024 1.60763 1.20536 1.00623 1.49586 1.22946 0.97397 0.91613 0.92478 0.89835 1.23200 1.01876 0.94346 0.98978 1.23532 1.00470 0.95964 0.83445 1.88837 1.76259 1.35879 1.27713 1.23094 0.91184 0.85071 0.97306 1.22910 0.99123 1.00219 0.95643 1.22427 0.94883 1.01024 0.97235 1.22337 0.97278 0.99794 0.96594 1.22611 0.95437 0.99967 0.99118 0.92914 0.98606 0.95507 0.84118 0.90682 0.90016 0.89663 0.92849 0.87101 0.91087 0.92094 0.91550 0.92199 0.90921 0.91519 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.35 9.32 -34.44 -0.32 -14.67 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 4.83 4.43 -4.97 -0.02 4.81 16 10 N -0.68 -14.48 6.07 -106.59 -0.65 -15.13 16 11 C 0.07 1.22 3.03 -66.38 -0.20 1.02 16 12 H 0.08 1.56 6.78 -51.93 -0.35 1.21 16 13 C -0.15 -2.19 6.89 -24.62 -0.17 -2.36 16 14 C 0.04 0.58 7.71 38.24 0.29 0.88 16 15 O -0.37 -6.08 10.77 -35.23 -0.38 -6.46 16 16 C 0.07 1.26 1.06 -89.76 -0.10 1.17 16 17 C -0.14 -2.48 4.76 -25.28 -0.12 -2.60 16 18 C -0.12 -1.86 6.91 -24.64 -0.17 -2.03 16 19 C -0.12 -1.91 6.84 -24.97 -0.17 -2.08 16 20 C -0.13 -2.10 6.28 -25.81 -0.16 -2.26 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.00 -0.10 6.81 -51.93 -0.35 -0.45 16 23 H 0.03 0.74 8.08 -51.93 -0.42 0.33 16 24 H 0.34 6.99 6.10 -39.29 -0.24 6.75 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.11 2.25 3.74 -51.93 -0.19 2.05 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 36 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -29.03 279.48 -8.02 -37.05 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.68 Total: 5.96 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.24 Total: -16.61 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.09 Total: -40.62 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.38 Total: -6.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.03 -8.02 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885695860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.995 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds