Wall clock time and date at job start Sun Mar 29 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.50657 * 2 1 4 4 C 1.53002 * 117.50217 * 3.75154 * 3 2 1 5 5 C 1.52999 * 117.50242 * 295.08752 * 3 2 1 6 6 C 1.53104 * 109.50890 * 239.87240 * 2 1 3 7 7 O 1.43018 * 109.25725 * 296.91637 * 6 2 1 8 8 C 1.43017 * 113.73387 * 301.32562 * 7 6 2 9 9 C 1.53096 * 109.26134 * 58.67234 * 8 7 6 10 10 N 1.47016 * 109.50941 * 120.08795 * 2 1 3 11 11 C 1.46892 * 110.99787 * 297.54238 * 10 2 1 12 12 C 1.50704 * 109.47025 * 189.99630 * 11 10 2 13 13 H 1.08005 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99876 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99819 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47167 * 89.99725 * 16 14 12 18 18 H 1.48499 * 109.46591 * 209.99778 * 16 14 12 19 19 H 1.48497 * 109.47076 * 329.99457 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.90961 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.91152 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.91133 * 1 2 3 23 23 H 1.09006 * 115.55206 * 149.41547 * 3 2 1 24 24 H 1.09005 * 117.49297 * 359.97438 * 4 3 2 25 25 H 1.08993 * 117.50627 * 145.01432 * 4 3 2 26 26 H 1.09001 * 117.50139 * 214.97857 * 5 3 2 27 27 H 1.09004 * 117.49873 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.50566 * 56.84491 * 6 2 1 29 29 H 1.08994 * 109.50831 * 176.97574 * 6 2 1 30 30 H 1.09003 * 109.50906 * 298.74022 * 8 7 6 31 31 H 1.09002 * 109.54090 * 178.62663 * 8 7 6 32 32 H 1.08992 * 109.51109 * 183.21360 * 9 8 7 33 33 H 1.08999 * 109.54470 * 63.10243 * 9 8 7 34 34 H 1.09002 * 109.47710 * 309.99907 * 11 10 2 35 35 H 1.09001 * 109.47414 * 70.00394 * 11 10 2 36 36 H 0.97005 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 1.0003 2.5603 0.0888 5 6 1.7344 2.3003 -1.2291 6 6 2.0413 -0.7244 -1.2482 7 8 1.6227 -2.0912 -1.2050 8 6 2.0838 -2.7982 -0.0505 9 6 1.5730 -2.0950 1.2098 10 7 2.0209 -0.6947 1.1990 11 6 1.5990 0.0025 2.4212 12 6 2.3157 -0.5870 3.6086 13 1 3.0150 -1.3981 3.4693 14 6 2.0794 -0.0900 4.8729 15 7 2.7044 -0.6048 5.9091 16 14 0.8704 1.3134 5.1139 17 1 -0.4885 0.7617 5.3466 18 1 1.2825 2.1257 6.2867 19 1 0.8562 2.1685 3.8999 20 1 -0.3633 0.5124 0.8908 21 1 -0.3633 -1.0277 -0.0016 22 1 -0.3634 0.5152 -0.8892 23 1 2.9959 1.6026 0.5004 24 1 -0.0483 2.2684 0.1468 25 1 1.2707 3.4564 0.6472 26 1 2.4876 3.0255 -1.5371 27 1 1.1684 1.8375 -2.0376 28 1 1.6331 -0.2467 -2.1390 29 1 3.1299 -0.6777 -1.2758 30 1 3.1737 -2.8119 -0.0432 31 1 1.7071 -3.8208 -0.0746 32 1 1.9689 -2.5969 2.0925 33 1 0.4837 -2.1284 1.2300 34 1 1.8434 1.0615 2.3382 35 1 0.5231 -0.1129 2.5523 36 1 2.5385 -0.2550 6.7986 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885704220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:11 Heat of formation + Delta-G solvation = -7.148762 kcal Electronic energy + Delta-G solvation = -16810.397693 eV Core-core repulsion = 14295.829971 eV Total energy + Delta-G solvation = -2514.567722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05974 -37.00760 -35.05118 -32.46079 -30.98243 -28.95692 -26.97228 -25.47700 -24.05902 -21.99491 -21.38617 -20.67642 -17.85223 -17.03520 -16.29833 -15.65526 -15.31723 -14.88497 -14.44987 -14.06181 -13.78630 -13.26574 -12.71370 -12.41030 -12.29809 -12.20533 -11.67326 -11.32450 -11.04772 -10.93117 -10.86029 -10.71107 -10.44014 -10.08054 -10.03965 -9.87025 -9.77032 -9.24780 -8.94700 -8.58144 -7.40320 -6.06698 -4.03556 3.26557 3.34508 3.37115 4.01024 4.17765 4.40767 4.52179 5.01204 5.08738 5.23617 5.27788 5.37298 5.45096 5.58216 5.60957 5.69973 5.77768 5.78900 5.89912 6.02408 6.04112 6.15374 6.23441 6.30126 6.33554 6.51616 6.58837 6.62212 6.90224 7.00033 7.47444 7.60405 7.86086 8.02282 8.64064 9.01225 9.55483 11.06420 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026360 B = 0.011087 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.967928 B = 2524.962042 C = 3252.865838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 C -0.126 4.126 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.081 3.919 7 O -0.391 6.391 8 C 0.062 3.938 9 C 0.025 3.975 10 N -0.512 5.512 11 C 0.163 3.837 12 C -0.510 4.510 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.265 1.265 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.036 0.964 35 H -0.016 1.016 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 2.335 -13.279 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 C -0.145 4.145 4 C -0.222 4.222 5 C -0.220 4.220 6 C 0.004 3.996 7 O -0.310 6.310 8 C -0.015 4.015 9 C -0.104 4.104 10 N -0.236 5.236 11 C 0.037 3.963 12 C -0.548 4.548 13 H 0.097 0.903 14 C -0.132 4.132 15 N -0.540 5.540 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.189 1.189 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.133 0.867 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.002 0.998 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.948 2.259 -13.224 13.735 hybrid contribution -1.389 0.957 0.710 1.830 sum -4.336 3.216 -12.513 13.628 Atomic orbital electron populations 1.22481 0.97237 1.02216 1.01503 1.21140 0.92529 0.92294 0.92949 1.22177 1.00632 0.90495 1.01180 1.23121 0.98369 1.00413 1.00265 1.22969 1.03765 1.03525 0.91771 1.22575 0.99011 0.81627 0.96410 1.87889 1.76346 1.23060 1.43662 1.22739 0.98962 0.95060 0.84767 1.22694 0.98096 0.90751 0.98812 1.62404 1.58315 1.01133 1.01730 1.20198 0.93535 0.95118 0.87463 1.21054 1.25078 1.19455 0.89197 0.90256 1.24876 0.95842 0.96567 0.95940 1.69890 1.42794 1.42299 0.98991 0.86904 0.81812 0.83274 0.78101 1.20417 1.21205 1.18937 0.92060 0.92004 0.92893 0.86746 0.88494 0.89167 0.89021 0.89138 0.89454 0.92564 0.92596 0.89236 0.88462 0.94800 0.94603 0.99790 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 6.25 37.16 0.23 -2.65 16 2 C 0.10 1.74 0.54 -131.49 -0.07 1.67 16 3 C -0.13 -2.03 3.79 -90.62 -0.34 -2.37 16 4 C -0.18 -2.70 9.46 -26.69 -0.25 -2.95 16 5 C -0.18 -2.30 9.43 -26.69 -0.25 -2.56 16 6 C 0.08 1.25 5.42 37.21 0.20 1.45 16 7 O -0.39 -6.46 10.28 -35.23 -0.36 -6.82 16 8 C 0.06 0.99 7.01 37.21 0.26 1.25 16 9 C 0.02 0.47 5.06 -3.71 -0.02 0.46 16 10 N -0.51 -10.57 4.48 -220.10 -0.99 -11.56 16 11 C 0.16 3.89 2.98 -4.98 -0.01 3.88 16 12 C -0.51 -14.31 9.04 -34.44 -0.31 -14.62 16 13 H 0.08 2.42 7.38 -52.48 -0.39 2.03 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 H 0.06 1.08 5.79 -51.93 -0.30 0.78 16 21 H 0.06 1.05 6.07 -51.93 -0.32 0.74 16 22 H 0.05 0.75 7.18 -51.93 -0.37 0.37 16 23 H 0.11 2.03 8.04 -51.93 -0.42 1.61 16 24 H 0.10 1.40 5.82 -51.93 -0.30 1.10 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.04 7.13 -51.93 -0.37 0.67 16 28 H 0.09 1.16 7.14 -51.93 -0.37 0.79 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.04 6.83 -51.93 -0.35 1.69 16 33 H 0.03 0.65 6.39 -51.93 -0.33 0.32 16 34 H 0.04 0.87 5.63 -51.93 -0.29 0.58 16 35 H -0.02 -0.38 6.32 -51.93 -0.33 -0.71 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 270.13 15.07 4.07 4.07 Total: -1.00 -29.99 270.13 -7.26 -37.25 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.42 Total: 1.48 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.67 Total: -14.55 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.21 Total: -38.25 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.36 Total: -6.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.99 -7.26 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885704220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.102 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds