Wall clock time and date at job start Sun Mar 29 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.50657 * 2 1 4 4 C 1.53002 * 117.50217 * 3.75154 * 3 2 1 5 5 C 1.52999 * 117.50242 * 295.08752 * 3 2 1 6 6 C 1.53104 * 109.50890 * 239.87240 * 2 1 3 7 7 O 1.43018 * 109.25725 * 296.91637 * 6 2 1 8 8 C 1.43017 * 113.73387 * 301.32562 * 7 6 2 9 9 C 1.53096 * 109.26134 * 58.67234 * 8 7 6 10 10 N 1.47016 * 109.50941 * 120.08795 * 2 1 3 11 11 C 1.46892 * 110.99787 * 297.54238 * 10 2 1 12 12 C 1.50704 * 109.47025 * 189.99630 * 11 10 2 13 13 H 1.08005 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00145 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99876 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99819 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47167 * 89.99725 * 16 14 12 18 18 H 1.48499 * 109.46591 * 209.99778 * 16 14 12 19 19 H 1.48497 * 109.47076 * 329.99457 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.90961 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.91152 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.91133 * 1 2 3 23 23 H 1.09006 * 115.55206 * 149.41547 * 3 2 1 24 24 H 1.09005 * 117.49297 * 359.97438 * 4 3 2 25 25 H 1.08993 * 117.50627 * 145.01432 * 4 3 2 26 26 H 1.09001 * 117.50139 * 214.97857 * 5 3 2 27 27 H 1.09004 * 117.49873 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.50566 * 56.84491 * 6 2 1 29 29 H 1.08994 * 109.50831 * 176.97574 * 6 2 1 30 30 H 1.09003 * 109.50906 * 298.74022 * 8 7 6 31 31 H 1.09002 * 109.54090 * 178.62663 * 8 7 6 32 32 H 1.08992 * 109.51109 * 183.21360 * 9 8 7 33 33 H 1.08999 * 109.54470 * 63.10243 * 9 8 7 34 34 H 1.09002 * 109.47710 * 309.99907 * 11 10 2 35 35 H 1.09001 * 109.47414 * 70.00394 * 11 10 2 36 36 H 0.97005 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 1.0003 2.5603 0.0888 5 6 1.7344 2.3003 -1.2291 6 6 2.0413 -0.7244 -1.2482 7 8 1.6227 -2.0912 -1.2050 8 6 2.0838 -2.7982 -0.0505 9 6 1.5730 -2.0950 1.2098 10 7 2.0209 -0.6947 1.1990 11 6 1.5990 0.0025 2.4212 12 6 2.3157 -0.5870 3.6086 13 1 3.0150 -1.3981 3.4693 14 6 2.0794 -0.0900 4.8729 15 7 2.7044 -0.6048 5.9091 16 14 0.8704 1.3134 5.1139 17 1 -0.4885 0.7617 5.3466 18 1 1.2825 2.1257 6.2867 19 1 0.8562 2.1685 3.8999 20 1 -0.3633 0.5124 0.8908 21 1 -0.3633 -1.0277 -0.0016 22 1 -0.3634 0.5152 -0.8892 23 1 2.9959 1.6026 0.5004 24 1 -0.0483 2.2684 0.1468 25 1 1.2707 3.4564 0.6472 26 1 2.4876 3.0255 -1.5371 27 1 1.1684 1.8375 -2.0376 28 1 1.6331 -0.2467 -2.1390 29 1 3.1299 -0.6777 -1.2758 30 1 3.1737 -2.8119 -0.0432 31 1 1.7071 -3.8208 -0.0746 32 1 1.9689 -2.5969 2.0925 33 1 0.4837 -2.1284 1.2300 34 1 1.8434 1.0615 2.3382 35 1 0.5231 -0.1129 2.5523 36 1 2.5385 -0.2550 6.7986 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885704220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:10 Heat of formation + Delta-G solvation = -28.107301 kcal Electronic energy + Delta-G solvation = -16811.306523 eV Core-core repulsion = 14295.829971 eV Total energy + Delta-G solvation = -2515.476552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42177 -38.22065 -36.61550 -34.55455 -32.32961 -30.74682 -28.39056 -27.13765 -25.36543 -23.26531 -23.04192 -22.05091 -19.29812 -19.00116 -17.73067 -17.03214 -16.73680 -16.28000 -16.09396 -15.56412 -15.23866 -15.01081 -14.36564 -14.08009 -13.75516 -13.61600 -13.05476 -12.88345 -12.67403 -12.42394 -12.28103 -12.20134 -11.95112 -11.79237 -11.43412 -11.37729 -11.13687 -11.02214 -10.79745 -10.29464 -9.03213 -8.30418 -6.32633 1.30410 1.32194 1.43419 2.31568 2.85399 2.92665 3.02244 3.11474 3.79906 3.89478 4.08522 4.09509 4.14841 4.26941 4.33026 4.39240 4.45724 4.69568 4.75048 4.78016 4.83192 4.84748 4.89814 4.95094 5.02101 5.03647 5.20076 5.26673 5.31018 5.37198 5.55463 5.97030 6.17579 6.34465 6.64277 6.73492 7.30773 8.86137 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026360 B = 0.011087 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.967928 B = 2524.962042 C = 3252.865838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 C -0.156 4.156 4 C -0.193 4.193 5 C -0.146 4.146 6 C 0.081 3.919 7 O -0.392 6.392 8 C 0.071 3.929 9 C 0.026 3.974 10 N -0.529 5.529 11 C 0.181 3.819 12 C -0.515 4.515 13 H 0.038 0.962 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.247 1.247 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.035 0.965 35 H -0.020 1.020 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 3.763 -15.717 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 C -0.174 4.174 4 C -0.229 4.229 5 C -0.183 4.183 6 C 0.005 3.995 7 O -0.311 6.311 8 C -0.006 4.006 9 C -0.103 4.103 10 N -0.253 5.253 11 C 0.054 3.946 12 C -0.554 4.554 13 H 0.056 0.944 14 C -0.187 4.187 15 N -0.588 5.588 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.171 1.171 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.053 0.947 35 H -0.002 1.002 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.306 3.684 -15.693 16.684 hybrid contribution -0.889 0.452 1.446 1.757 sum -5.195 4.136 -14.246 15.718 Atomic orbital electron populations 1.22411 0.96424 1.01820 1.02092 1.21298 0.93165 0.92907 0.91718 1.22059 1.00186 0.90426 1.04751 1.23194 0.98114 0.99567 1.02074 1.23080 1.02870 1.01601 0.90773 1.22727 0.99147 0.81067 0.96601 1.87892 1.76383 1.23630 1.43191 1.22702 0.98881 0.95897 0.83126 1.22659 0.97825 0.90317 0.99470 1.62290 1.59211 1.01828 1.02002 1.19835 0.92359 0.94850 0.87535 1.21309 1.24414 1.18405 0.91240 0.94387 1.25777 0.97880 0.99506 0.95518 1.70042 1.44841 1.44271 0.99645 0.85811 0.79217 0.79904 0.78690 1.19550 1.20647 1.17099 0.93709 0.92875 0.89962 0.89249 0.88279 0.89220 0.87259 0.87034 0.86259 0.92757 0.92715 0.86551 0.91547 0.95025 0.94734 1.00231 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 6.25 71.98 0.45 -4.69 16 2 C 0.10 3.22 0.54 3.54 0.00 3.22 16 3 C -0.16 -4.69 3.79 -10.79 -0.04 -4.73 16 4 C -0.19 -5.08 9.46 30.62 0.29 -4.79 16 5 C -0.15 -3.08 9.43 30.62 0.29 -2.79 16 6 C 0.08 2.27 5.42 72.02 0.39 2.67 16 7 O -0.39 -11.95 10.28 -148.98 -1.53 -13.48 16 8 C 0.07 2.20 7.01 72.01 0.50 2.70 16 9 C 0.03 1.00 5.06 86.31 0.44 1.43 16 10 N -0.53 -21.99 4.48 -850.28 -3.81 -25.80 16 11 C 0.18 8.75 2.98 85.56 0.25 9.01 16 12 C -0.52 -30.05 9.04 25.60 0.23 -29.82 16 13 H 0.04 2.46 7.38 -2.91 -0.02 2.44 16 14 C 0.01 0.62 5.47 84.66 0.46 1.08 16 15 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 16 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 20 H 0.04 1.50 5.79 -2.39 -0.01 1.48 16 21 H 0.05 1.70 6.07 -2.39 -0.01 1.68 16 22 H 0.08 1.99 7.18 -2.38 -0.02 1.97 16 23 H 0.09 3.14 8.04 -2.38 -0.02 3.12 16 24 H 0.10 2.57 5.82 -2.38 -0.01 2.55 16 25 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.11 1.92 7.13 -2.39 -0.02 1.90 16 28 H 0.12 2.59 7.14 -2.39 -0.02 2.57 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.12 2.97 8.14 -2.39 -0.02 2.96 16 32 H 0.07 2.95 6.83 -2.39 -0.02 2.93 16 33 H 0.03 1.23 6.39 -2.39 -0.02 1.21 16 34 H 0.03 1.68 5.63 -2.39 -0.01 1.67 16 35 H -0.02 -0.97 6.32 -2.39 -0.02 -0.99 16 36 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -66.39 270.13 1.12 -65.27 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.00 Total: 13.56 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.27 Total: -26.70 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.51 Total: -85.14 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.53 Total: -13.48 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -66.39 1.12 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885704220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.163 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds