Wall clock time and date at job start Sun Mar 29 2020 22:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.52995 * 109.47003 * 120.00125 * 2 1 3 5 5 C 1.50704 * 112.84955 * 305.42949 * 4 2 1 6 6 O 1.21284 * 120.00188 * 258.72866 * 5 4 2 7 7 N 1.34783 * 119.99849 * 79.00461 * 5 4 2 8 8 C 1.46497 * 119.99833 * 4.35493 * 7 5 4 9 9 C 1.37095 * 119.99918 * 184.35352 * 7 5 4 10 10 H 1.07998 * 119.99971 * 4.34768 * 9 7 5 11 11 C 1.38947 * 120.00131 * 184.34522 * 9 7 5 12 12 N 1.31415 * 119.99878 * 6.15868 * 11 9 7 13 13 Si 1.86792 * 120.00460 * 186.15452 * 11 9 7 14 14 H 1.48500 * 109.47012 * 60.00063 * 13 11 9 15 15 H 1.48498 * 109.47664 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47214 * 300.00339 * 13 11 9 17 17 C 1.53785 * 113.61552 * 76.62633 * 4 2 1 18 18 C 1.53956 * 87.01609 * 89.23084 * 17 4 2 19 19 C 1.53778 * 87.11337 * 25.36450 * 18 17 4 20 20 H 1.08992 * 109.47291 * 173.34557 * 1 2 3 21 21 H 1.09002 * 109.47053 * 293.35125 * 1 2 3 22 22 H 1.09001 * 109.47002 * 53.34374 * 1 2 3 23 23 H 1.08999 * 109.46574 * 239.99925 * 2 1 3 24 24 H 1.09007 * 109.46899 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47509 * 299.99665 * 3 2 1 26 26 H 1.08998 * 109.47054 * 60.00239 * 3 2 1 27 27 H 1.08996 * 109.47359 * 354.26051 * 8 7 5 28 28 H 1.08998 * 109.47709 * 114.26755 * 8 7 5 29 29 H 1.09006 * 109.46837 * 234.26287 * 8 7 5 30 30 H 0.96998 * 120.00074 * 179.97438 * 12 11 9 31 31 H 1.08998 * 113.61135 * 203.74750 * 17 4 2 32 32 H 1.08998 * 113.61125 * 334.65300 * 17 4 2 33 33 H 1.09001 * 113.53624 * 270.81101 * 18 17 4 34 34 H 1.09005 * 113.73982 * 139.94830 * 18 17 4 35 35 H 1.08999 * 113.61131 * 220.09166 * 19 18 17 36 36 H 1.08997 * 113.69211 * 89.19909 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.4760 -0.1513 2.5252 6 8 2.1470 0.5973 3.2037 7 7 0.2279 -0.4779 2.9154 8 6 -0.5450 -1.4600 2.1510 9 6 -0.3183 0.1089 4.0275 10 1 0.2231 0.8835 4.5503 11 6 -1.5683 -0.2929 4.4821 12 7 -2.1738 -1.3157 3.9214 13 14 -2.3881 0.6204 5.8902 14 1 -2.5847 2.0424 5.5100 15 1 -3.7052 0.0001 6.1825 16 1 -1.5263 0.5455 7.0973 17 6 1.9381 -2.2532 1.1608 18 6 3.3454 -2.2304 0.5370 19 6 3.5671 -0.9006 1.2768 20 1 -0.3633 -1.0207 -0.1191 21 1 -0.3633 0.4073 0.9435 22 1 -0.3633 0.6135 -0.8244 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 0.0071 -1.7378 1.2532 28 1 -0.7130 -2.3462 2.7629 29 1 -1.5044 -1.0267 1.8680 30 1 -3.0462 -1.5964 4.2389 31 1 1.8993 -2.7449 2.1328 32 1 1.1624 -2.6005 0.4783 33 1 3.3388 -2.1304 -0.5484 34 1 3.9923 -3.0362 0.8839 35 1 4.1046 -0.1576 0.6877 36 1 3.9746 -1.0205 2.2806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142650240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:28 Heat of formation + Delta-G solvation = -12.179079 kcal Electronic energy + Delta-G solvation = -17068.345521 eV Core-core repulsion = 14553.559668 eV Total energy + Delta-G solvation = -2514.785853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92376 -38.59247 -36.75809 -34.78010 -33.47372 -29.45942 -27.89631 -27.10754 -26.10651 -25.55966 -22.61583 -21.37762 -19.17708 -18.78664 -17.70384 -16.75489 -16.67904 -15.98535 -15.72577 -15.02516 -14.73734 -14.37797 -14.15221 -13.70120 -13.53465 -13.19271 -12.99262 -12.78224 -12.66121 -12.42499 -12.38362 -12.37382 -12.15010 -12.01267 -11.66567 -11.42264 -11.04094 -10.91172 -10.87948 -10.01115 -9.79902 -8.20507 -5.88114 1.35353 1.36110 1.46959 2.10375 2.25228 3.11758 3.16301 3.60049 3.68725 3.89029 3.94633 4.16426 4.32754 4.43051 4.49245 4.69055 4.80704 4.82381 4.88324 4.95205 5.00751 5.06524 5.12021 5.16070 5.20221 5.26032 5.38151 5.43726 5.46782 5.58646 5.59641 5.63536 6.07972 6.53006 7.20863 7.58559 8.13161 8.68455 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.009419 C = 0.009299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.503009 B = 2972.143807 C = 3010.220778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.094 4.094 5 C 0.450 3.550 6 O -0.647 6.647 7 N -0.459 5.459 8 C 0.115 3.885 9 C -0.343 4.343 10 H 0.069 0.931 11 C -0.006 4.006 12 N -0.896 5.896 13 Si 0.988 3.012 14 H -0.273 1.273 15 H -0.266 1.266 16 H -0.276 1.276 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.117 4.117 20 H 0.074 0.926 21 H 0.033 0.967 22 H 0.069 0.931 23 H 0.114 0.886 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.270 0.730 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -3.113 -11.112 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.098 4.098 5 C 0.240 3.760 6 O -0.536 6.536 7 N -0.176 5.176 8 C -0.026 4.026 9 C -0.471 4.471 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.537 5.537 13 Si 0.811 3.189 14 H -0.199 1.199 15 H -0.190 1.190 16 H -0.202 1.202 17 C -0.167 4.167 18 C -0.153 4.153 19 C -0.155 4.155 20 H 0.093 0.907 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.132 0.868 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.233 -2.884 -10.743 11.902 hybrid contribution -0.699 0.652 1.528 1.803 sum 3.534 -2.232 -9.215 10.118 Atomic orbital electron populations 1.22407 0.95490 1.02593 1.01598 1.20868 0.95497 0.95891 0.95318 1.21778 1.01335 0.96031 1.00704 1.22135 0.97922 0.96925 0.92769 1.20799 0.81460 0.84688 0.89066 1.90427 1.60617 1.43267 1.59318 1.43925 1.12600 1.37010 1.24077 1.22337 0.94544 0.91210 0.94557 1.19683 1.01858 1.19006 1.06568 0.91307 1.25987 0.96728 0.96959 1.00945 1.70273 1.16125 1.24992 1.42278 0.85089 0.77619 0.78307 0.77855 1.19854 1.19030 1.20194 1.23138 0.99535 0.92917 1.01132 1.22867 0.95216 0.96246 1.00976 1.22773 0.93242 0.99217 1.00289 0.90737 0.94801 0.91245 0.86833 0.91889 0.90496 0.96594 0.89136 0.94229 0.93690 0.91989 0.92311 0.88614 0.86965 0.90168 0.90111 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 7.29 71.98 0.52 -4.75 16 2 C -0.06 -1.72 2.33 -10.79 -0.03 -1.74 16 3 C -0.14 -4.42 8.90 71.98 0.64 -3.78 16 4 C -0.09 -3.43 0.27 -52.40 -0.01 -3.45 16 5 C 0.45 23.01 5.20 87.66 0.46 23.46 16 6 O -0.65 -38.86 16.10 -3.04 -0.05 -38.91 16 7 N -0.46 -24.74 2.30 -658.90 -1.52 -26.25 16 8 C 0.12 5.34 5.63 127.77 0.72 6.06 16 9 C -0.34 -20.51 9.56 84.04 0.80 -19.71 16 10 H 0.07 4.43 7.19 -2.91 -0.02 4.41 16 11 C -0.01 -0.31 5.41 84.93 0.46 0.15 16 12 N -0.90 -48.37 9.53 21.66 0.21 -48.17 16 13 Si 0.99 44.35 29.56 68.60 2.03 46.38 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C -0.13 -3.96 4.99 31.18 0.16 -3.80 16 18 C -0.12 -2.73 7.74 31.18 0.24 -2.48 16 19 C -0.12 -3.77 6.72 31.12 0.21 -3.56 16 20 H 0.07 2.16 5.89 -2.39 -0.01 2.15 16 21 H 0.03 1.41 5.11 -2.39 -0.01 1.40 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.11 2.50 7.32 -2.39 -0.02 2.48 16 24 H 0.06 1.82 6.77 -2.38 -0.02 1.80 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 26 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 27 H 0.09 3.38 1.40 -2.39 0.00 3.38 16 28 H 0.04 1.98 6.97 -2.39 -0.02 1.96 16 29 H 0.04 2.20 6.66 -2.38 -0.02 2.18 16 30 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 32 H 0.10 2.47 6.60 -2.39 -0.02 2.46 16 33 H 0.11 1.94 7.61 -2.39 -0.02 1.92 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 2.32 6.75 -2.39 -0.02 2.30 16 36 H 0.05 2.02 7.97 -2.39 -0.02 2.00 16 Total: -1.00 -70.61 267.45 5.91 -64.70 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.07 Total: 15.86 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.17 Total: -13.61 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -1.31 Total: -74.42 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.05 Total: -38.91 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.61 5.91 -64.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142650240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.521 kcal (2) G-P(sol) polarization free energy of solvation -70.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds