Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48497 * 109.46916 * 240.00221 * 3 2 1 5 5 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47301 * 120.00011 * 3 2 1 7 7 C 1.37873 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.53510 * 114.17359 * 180.02562 * 9 7 2 11 11 N 1.47472 * 87.93567 * 139.67153 * 10 9 7 12 12 C 1.46906 * 111.00187 * 221.29686 * 11 10 9 13 13 H 1.08999 * 109.53866 * 300.15998 * 12 11 10 14 14 C 1.54207 * 109.53707 * 179.97438 * 12 11 10 15 15 C 1.46289 * 111.98623 * 162.60763 * 14 12 11 16 16 C 1.54116 * 112.20383 * 61.40989 * 15 14 12 17 17 O 1.40319 * 108.70479 * 280.44221 * 16 15 14 18 18 C 1.43995 * 116.58142 * 95.04515 * 17 16 15 19 19 C 1.50619 * 109.53472 * 60.41086 * 12 11 10 20 20 C 1.47474 * 87.83857 * 332.99021 * 11 10 9 21 21 H 0.97007 * 119.99659 * 0.02562 * 1 2 3 22 22 H 1.09001 * 113.25430 * 47.05132 * 9 7 2 23 23 H 1.08999 * 113.47644 * 24.90238 * 10 9 7 24 24 H 1.09005 * 113.47783 * 254.44093 * 10 9 7 25 25 H 1.09004 * 108.97356 * 283.24932 * 14 12 11 26 26 H 1.09000 * 108.98088 * 41.95955 * 14 12 11 27 27 H 1.08993 * 108.93474 * 182.11511 * 15 14 12 28 28 H 1.09001 * 108.93509 * 300.71049 * 15 14 12 29 29 H 1.09003 * 109.59823 * 40.20751 * 16 15 14 30 30 H 1.08996 * 109.60045 * 160.67046 * 16 15 14 31 31 H 1.09002 * 108.69880 * 78.90638 * 18 17 16 32 32 H 1.08995 * 108.69411 * 197.00685 * 18 17 16 33 33 H 1.08995 * 108.88713 * 330.97212 * 19 12 11 34 34 H 1.09007 * 108.88261 * 89.43384 * 19 12 11 35 35 H 1.08998 * 113.48515 * 141.77227 * 20 11 10 36 36 H 1.09001 * 113.47583 * 272.24643 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.1494 -3.7438 -0.0005 11 7 1.2074 -4.3583 0.9532 12 6 1.9258 -5.0863 2.0078 13 1 2.5338 -5.8719 1.5591 14 6 0.9107 -5.7136 2.9846 15 6 1.5148 -6.7668 3.8007 16 6 2.6635 -6.2355 4.6801 17 8 3.8162 -6.1134 3.8894 18 6 4.0728 -4.8158 3.3203 19 6 2.8115 -4.1319 2.7649 20 6 0.8553 -2.9967 1.3969 21 1 -0.4850 0.8401 -0.0004 22 1 0.4445 -2.5305 -0.7333 23 1 3.1389 -3.5651 0.4204 24 1 2.1862 -4.2529 -0.9637 25 1 0.5230 -4.9347 3.6413 26 1 0.0846 -6.1374 2.4137 27 1 0.7484 -7.1997 4.4434 28 1 1.9034 -7.5446 3.1433 29 1 2.3930 -5.2603 5.0850 30 1 2.8520 -6.9331 5.4961 31 1 4.5067 -4.1766 4.0893 32 1 4.7941 -4.9258 2.5106 33 1 3.1130 -3.3251 2.0970 34 1 2.2454 -3.7078 3.5943 35 1 -0.2047 -2.8724 1.6180 36 1 1.4994 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170804067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = -28.492019 kcal Electronic energy + Delta-G solvation = -16416.784387 eV Core-core repulsion = 13901.291152 eV Total energy + Delta-G solvation = -2515.493235 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76628 -39.45542 -35.69089 -34.52584 -33.15918 -29.93320 -27.64459 -26.63881 -26.62749 -24.55069 -22.04222 -21.40115 -19.60356 -18.89639 -17.77643 -17.26926 -16.59606 -16.26835 -16.07737 -15.53902 -15.41392 -14.56803 -14.38838 -13.98653 -13.86518 -13.41643 -13.14321 -12.84961 -12.64454 -12.45473 -12.25710 -12.11720 -11.92396 -11.63645 -11.42444 -11.26919 -11.02807 -10.83351 -10.48863 -10.38383 -9.54328 -8.15075 -6.26819 1.42691 1.44083 1.51844 2.41944 2.89311 3.14194 3.30310 3.60609 3.87479 3.95916 4.10220 4.16292 4.27873 4.34272 4.42501 4.57419 4.58755 4.63242 4.71668 4.79302 4.84730 4.94306 5.04111 5.08031 5.11285 5.17394 5.23530 5.31961 5.38190 5.62527 5.64953 5.85079 6.29523 6.42453 6.45492 6.82749 7.41899 8.94565 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041672 B = 0.007104 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.756016 B = 3940.608242 C = 4220.264178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.004 3.996 11 N -0.482 5.482 12 C 0.056 3.944 13 H 0.078 0.922 14 C -0.101 4.101 15 C -0.141 4.141 16 C 0.062 3.938 17 O -0.399 6.399 18 C 0.073 3.927 19 C -0.182 4.182 20 C 0.010 3.990 21 H 0.262 0.738 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -9.934 8.880 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.003 3.997 10 C -0.125 4.125 11 N -0.204 5.204 12 C -0.053 4.053 13 H 0.096 0.904 14 C -0.139 4.139 15 C -0.179 4.179 16 C -0.015 4.015 17 O -0.318 6.318 18 C -0.004 4.004 19 C -0.221 4.221 20 C -0.119 4.119 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.207 -10.471 8.636 14.537 hybrid contribution 0.354 1.814 0.128 1.852 sum 5.561 -8.657 8.764 13.516 Atomic orbital electron populations 1.70098 1.07617 1.27621 1.50865 1.25827 0.95554 1.02696 0.94340 0.85638 0.78372 0.78749 0.79085 1.19410 1.21180 1.19244 1.21336 0.93019 0.91317 1.51049 0.92074 1.20018 0.94378 0.92079 0.93190 1.23913 0.96032 0.95815 0.96724 1.69008 1.27506 1.13048 1.10832 1.21823 0.94439 0.96359 0.92664 0.90416 1.20478 0.97997 0.98507 0.96956 1.21061 0.99011 0.98369 0.99455 1.22516 0.84946 1.00996 0.92996 1.87404 1.44725 1.32096 1.67582 1.22891 0.95604 0.83986 0.97891 1.22664 0.98141 1.00223 1.01049 1.23931 0.98884 0.88725 1.00378 0.92882 0.95737 0.91175 0.91401 0.93193 0.92071 0.89236 0.91544 0.93078 0.87781 0.91995 0.89100 0.90435 0.91974 0.94327 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 13.26 21.45 0.28 -53.94 16 2 C 0.02 0.83 5.46 84.65 0.46 1.30 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.53 -28.62 8.82 25.60 0.23 -28.39 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 1.15 3.77 -11.19 -0.04 1.10 16 10 C 0.00 0.16 7.03 83.57 0.59 0.74 16 11 N -0.48 -19.49 6.36 -904.69 -5.76 -25.25 16 12 C 0.06 1.84 2.05 44.55 0.09 1.93 16 13 H 0.08 2.54 7.83 -2.39 -0.02 2.53 16 14 C -0.10 -2.90 4.83 28.94 0.14 -2.76 16 15 C -0.14 -3.14 5.47 28.90 0.16 -2.98 16 16 C 0.06 1.34 6.38 72.36 0.46 1.80 16 17 O -0.40 -10.31 10.17 -143.43 -1.46 -11.77 16 18 C 0.07 1.86 6.67 72.27 0.48 2.34 16 19 C -0.18 -5.60 3.07 30.11 0.09 -5.50 16 20 C 0.01 0.45 6.85 83.57 0.57 1.03 16 21 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 22 H 0.02 1.42 8.11 -2.39 -0.02 1.40 16 23 H 0.07 2.77 6.00 -2.39 -0.01 2.76 16 24 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 25 H 0.05 1.47 7.59 -2.38 -0.02 1.45 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.05 1.10 6.98 -2.39 -0.02 1.08 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.74 4.73 -2.39 -0.01 2.73 16 34 H 0.06 1.92 6.35 -2.38 -0.02 1.91 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 3.10 5.03 -2.39 -0.01 3.09 16 Total: -1.00 -59.84 274.91 -0.63 -60.47 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.05 Total: 15.11 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 3.23 Total: -29.39 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -5.47 Total: -79.19 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.46 Total: -11.77 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -59.84 -0.63 -60.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170804067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.979 kcal (2) G-P(sol) polarization free energy of solvation -59.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds