Wall clock time and date at job start Sun Mar 29 2020 21:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47695 * 2 1 4 4 C 1.53005 * 109.46874 * 119.99989 * 2 1 3 5 5 C 1.52997 * 109.47082 * 295.00074 * 4 2 1 6 6 C 1.50698 * 109.46954 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00655 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 119.99936 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47186 * 90.00441 * 10 8 6 12 12 H 1.48507 * 109.47448 * 209.99951 * 10 8 6 13 13 H 1.48497 * 109.47571 * 330.00521 * 10 8 6 14 14 N 1.46499 * 109.47127 * 239.99531 * 2 1 3 15 15 N 1.28784 * 125.45260 * 300.03213 * 14 2 1 16 16 N 1.28992 * 108.72547 * 179.73423 * 15 14 2 17 17 C 1.33314 * 107.35685 * 359.97438 * 16 15 14 18 18 C 1.50702 * 126.54797 * 179.97438 * 17 16 15 19 19 N 1.46900 * 109.47115 * 89.97760 * 18 17 16 20 20 N 1.28885 * 125.44691 * 119.72149 * 14 2 1 21 21 H 1.09001 * 109.47234 * 300.00695 * 1 2 3 22 22 H 1.09000 * 109.46754 * 59.99537 * 1 2 3 23 23 H 1.08994 * 109.47695 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47011 * 54.99991 * 4 2 1 25 25 H 1.09000 * 109.47448 * 174.99375 * 4 2 1 26 26 H 1.09001 * 109.47130 * 299.99844 * 5 4 2 27 27 H 1.09001 * 109.47180 * 59.99754 * 5 4 2 28 28 H 0.96998 * 119.99667 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.46700 * 209.97375 * 18 17 16 30 30 H 1.08993 * 109.47139 * 329.97095 * 18 17 16 31 31 H 1.00899 * 110.99689 * 179.97438 * 19 18 17 32 32 H 1.00905 * 110.99949 * 303.94379 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 0.0689 2.4953 6 6 2.1369 -0.6419 3.7258 7 1 2.6896 -1.5646 3.6289 8 6 1.8912 -0.1135 4.9755 9 7 2.3295 -0.7335 6.0493 10 14 0.9371 1.4836 5.1431 11 1 -0.5130 1.1843 5.2578 12 1 1.3909 2.2061 6.3586 13 1 1.1746 2.3301 3.9464 14 7 2.0183 -0.6907 -1.1961 15 7 1.7723 -1.9169 -1.5034 16 7 2.3546 -2.1884 -2.6219 17 6 2.9851 -1.0834 -3.0205 18 6 3.8036 -0.9204 -4.2753 19 7 2.9355 -0.4690 -5.3710 20 7 2.7583 -0.1667 -2.1121 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6053 -1.7198 1.2952 25 1 3.1262 -0.7997 1.2057 26 1 2.0698 1.0674 2.4494 27 1 0.5488 0.1472 2.5389 28 1 2.1563 -0.3620 6.9284 29 1 4.5870 -0.1819 -4.1046 30 1 4.2565 -1.8757 -4.5404 31 1 3.4614 -0.3518 -6.2241 32 1 2.1637 -1.1048 -5.5062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:14 Heat of formation + Delta-G solvation = 112.321065 kcal Electronic energy + Delta-G solvation = -15156.429259 eV Core-core repulsion = 12575.794545 eV Total energy + Delta-G solvation = -2580.634714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.13661 -37.05374 -35.22587 -33.64816 -32.75257 -31.56638 -29.54769 -26.33844 -25.84915 -24.54348 -21.97721 -21.66362 -19.92774 -17.50515 -16.98378 -16.60366 -16.32925 -14.92331 -14.72677 -14.30430 -13.91624 -13.82992 -13.28185 -12.86828 -12.73529 -12.68424 -11.95921 -11.74044 -11.58699 -11.13749 -10.93528 -10.79060 -10.73187 -10.35328 -10.18826 -9.92405 -9.70079 -9.32735 -9.08023 -8.63691 -6.13484 -4.13537 1.48767 2.14961 2.25453 3.23164 3.31500 3.32199 3.90083 4.30953 4.35420 4.48988 4.79819 4.91639 5.15661 5.16692 5.19343 5.40602 5.62333 5.71481 5.78336 5.93977 6.07321 6.09358 6.23687 6.52853 6.58445 6.67940 7.03464 7.06627 7.16987 7.64016 8.41633 8.58853 8.90471 9.46747 10.99755 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.057493 B = 0.005277 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.898936 B = 5305.243902 C = 5445.464684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.120 0.880 4 C -0.110 4.110 5 C -0.007 4.007 6 C -0.525 4.525 7 H 0.073 0.927 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.879 3.121 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.265 1.265 14 N -0.120 5.120 15 N -0.055 5.055 16 N -0.296 5.296 17 C 0.151 3.849 18 C 0.165 3.835 19 N -0.844 5.844 20 N -0.295 5.295 21 H 0.098 0.902 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.351 0.649 32 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 2.417 -18.296 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 H 0.138 0.862 4 C -0.149 4.149 5 C -0.045 4.045 6 C -0.563 4.563 7 H 0.091 0.909 8 C -0.133 4.133 9 N -0.537 5.537 10 Si 0.706 3.294 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.189 1.189 14 N -0.033 5.033 15 N -0.048 5.048 16 N -0.168 5.168 17 C -0.133 4.133 18 C 0.032 3.968 19 N -0.376 5.376 20 N -0.146 5.146 21 H 0.117 0.883 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.165 2.788 -17.173 17.436 hybrid contribution 0.117 0.172 -0.461 0.506 sum -1.047 2.960 -17.633 17.911 Atomic orbital electron populations 1.22240 0.91659 1.04466 1.03678 1.22452 0.96409 0.97328 0.79011 0.86204 1.21966 1.01231 1.00471 0.91241 1.19605 0.96701 0.95831 0.92386 1.21013 1.36279 1.10029 0.88972 0.90888 1.25013 0.95330 0.97186 0.95763 1.69905 1.46121 1.39615 0.98105 0.86797 0.80538 0.84120 0.77955 1.20095 1.21235 1.18931 1.50710 1.28751 1.06837 1.17046 1.78911 1.17581 0.99334 1.08943 1.75782 1.11403 1.24483 1.05127 1.25342 1.02305 0.86759 0.98856 1.19793 0.92338 1.00650 0.84033 1.58567 1.13972 1.55956 1.09148 1.74655 1.12681 1.27042 1.00230 0.88344 0.92292 0.90541 0.90512 0.91662 0.96101 0.96051 0.92547 0.88234 0.92138 0.83491 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.14 37.16 0.34 -1.87 16 2 C 0.15 2.30 3.31 -67.93 -0.23 2.08 16 3 H 0.12 1.74 8.14 -51.93 -0.42 1.31 16 4 C -0.11 -2.07 4.81 -26.73 -0.13 -2.20 16 5 C -0.01 -0.16 3.80 -27.89 -0.11 -0.26 16 6 C -0.53 -14.39 9.66 -34.44 -0.33 -14.72 16 7 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 10 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -5.84 6.54 56.52 0.37 -5.48 16 14 N -0.12 -2.01 3.73 -4.95 -0.02 -2.03 16 15 N -0.06 -0.98 12.95 60.35 0.78 -0.19 16 16 N -0.30 -4.95 12.50 32.44 0.41 -4.54 16 17 C 0.15 2.24 7.88 -156.63 -1.23 1.00 16 18 C 0.17 1.68 7.41 -4.97 -0.04 1.65 16 19 N -0.84 -7.47 9.61 -11.41 -0.11 -7.58 16 20 N -0.30 -4.86 12.13 32.46 0.39 -4.46 16 21 H 0.10 1.29 6.57 -51.93 -0.34 0.94 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 27 H 0.02 0.44 5.99 -51.93 -0.31 0.13 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.35 2.03 9.08 -39.29 -0.36 1.67 16 32 H 0.35 3.02 8.99 -39.29 -0.35 2.67 16 LS Contribution 275.69 15.07 4.15 4.15 Total: -1.00 -31.73 275.69 -4.39 -36.12 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.28 Total: 1.40 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.82 Total: -12.48 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 2.23 Total: -45.17 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.73 -4.39 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.439 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds