Wall clock time and date at job start Sun Mar 29 2020 21:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47695 * 2 1 4 4 C 1.53005 * 109.46874 * 119.99989 * 2 1 3 5 5 C 1.52997 * 109.47082 * 295.00074 * 4 2 1 6 6 C 1.50698 * 109.46954 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00655 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 119.99936 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47186 * 90.00441 * 10 8 6 12 12 H 1.48507 * 109.47448 * 209.99951 * 10 8 6 13 13 H 1.48497 * 109.47571 * 330.00521 * 10 8 6 14 14 N 1.46499 * 109.47127 * 239.99531 * 2 1 3 15 15 N 1.28784 * 125.45260 * 300.03213 * 14 2 1 16 16 N 1.28992 * 108.72547 * 179.73423 * 15 14 2 17 17 C 1.33314 * 107.35685 * 359.97438 * 16 15 14 18 18 C 1.50702 * 126.54797 * 179.97438 * 17 16 15 19 19 N 1.46900 * 109.47115 * 89.97760 * 18 17 16 20 20 N 1.28885 * 125.44691 * 119.72149 * 14 2 1 21 21 H 1.09001 * 109.47234 * 300.00695 * 1 2 3 22 22 H 1.09000 * 109.46754 * 59.99537 * 1 2 3 23 23 H 1.08994 * 109.47695 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47011 * 54.99991 * 4 2 1 25 25 H 1.09000 * 109.47448 * 174.99375 * 4 2 1 26 26 H 1.09001 * 109.47130 * 299.99844 * 5 4 2 27 27 H 1.09001 * 109.47180 * 59.99754 * 5 4 2 28 28 H 0.96998 * 119.99667 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.46700 * 209.97375 * 18 17 16 30 30 H 1.08993 * 109.47139 * 329.97095 * 18 17 16 31 31 H 1.00899 * 110.99689 * 179.97438 * 19 18 17 32 32 H 1.00905 * 110.99949 * 303.94379 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 0.0689 2.4953 6 6 2.1369 -0.6419 3.7258 7 1 2.6896 -1.5646 3.6289 8 6 1.8912 -0.1135 4.9755 9 7 2.3295 -0.7335 6.0493 10 14 0.9371 1.4836 5.1431 11 1 -0.5130 1.1843 5.2578 12 1 1.3909 2.2061 6.3586 13 1 1.1746 2.3301 3.9464 14 7 2.0183 -0.6907 -1.1961 15 7 1.7723 -1.9169 -1.5034 16 7 2.3546 -2.1884 -2.6219 17 6 2.9851 -1.0834 -3.0205 18 6 3.8036 -0.9204 -4.2753 19 7 2.9355 -0.4690 -5.3710 20 7 2.7583 -0.1667 -2.1121 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6053 -1.7198 1.2952 25 1 3.1262 -0.7997 1.2057 26 1 2.0698 1.0674 2.4494 27 1 0.5488 0.1472 2.5389 28 1 2.1563 -0.3620 6.9284 29 1 4.5870 -0.1819 -4.1046 30 1 4.2565 -1.8757 -4.5404 31 1 3.4614 -0.3518 -6.2241 32 1 2.1637 -1.1048 -5.5062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:14 Heat of formation + Delta-G solvation = 87.604382 kcal Electronic energy + Delta-G solvation = -15157.501054 eV Core-core repulsion = 12575.794545 eV Total energy + Delta-G solvation = -2581.706509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.37663 -38.37478 -36.18186 -35.23102 -34.34321 -32.97218 -31.05147 -27.61198 -27.03941 -26.01956 -23.28019 -23.08226 -21.39865 -19.22592 -18.23929 -18.08386 -17.29888 -16.27646 -16.05468 -15.73469 -15.03614 -14.95595 -14.77668 -14.48540 -14.05797 -13.79528 -13.38746 -13.10514 -12.87381 -12.69927 -12.34195 -12.21772 -12.01548 -11.90986 -11.80774 -11.62837 -11.42665 -11.07903 -10.75232 -9.75882 -8.28610 -6.35016 0.20612 0.93305 1.08711 1.40677 1.43261 1.54182 2.38332 2.86430 3.07265 3.21132 3.63742 3.68050 3.77537 3.92464 4.28501 4.36144 4.47893 4.53853 4.64076 4.69644 4.76897 4.79015 4.90161 5.11912 5.23730 5.34874 5.46818 5.63293 6.01706 6.25193 6.52797 6.73000 7.29480 7.34004 8.88540 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.057493 B = 0.005277 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.898936 B = 5305.243902 C = 5445.464684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.139 0.861 4 C -0.099 4.099 5 C -0.003 4.003 6 C -0.538 4.538 7 H 0.024 0.976 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.953 3.047 11 H -0.262 1.262 12 H -0.290 1.290 13 H -0.233 1.233 14 N -0.122 5.122 15 N -0.077 5.077 16 N -0.310 5.310 17 C 0.155 3.845 18 C 0.166 3.834 19 N -0.849 5.849 20 N -0.309 5.309 21 H 0.110 0.890 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.369 0.631 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 4.553 -20.175 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.156 0.844 4 C -0.138 4.138 5 C -0.041 4.041 6 C -0.576 4.576 7 H 0.042 0.958 8 C -0.194 4.194 9 N -0.595 5.595 10 Si 0.776 3.224 11 H -0.187 1.187 12 H -0.216 1.216 13 H -0.156 1.156 14 N -0.036 5.036 15 N -0.070 5.070 16 N -0.181 5.181 17 C -0.128 4.128 18 C 0.032 3.968 19 N -0.384 5.384 20 N -0.160 5.160 21 H 0.128 0.872 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.149 4.916 -19.102 19.841 hybrid contribution 0.525 -0.608 0.079 0.807 sum -1.625 4.309 -19.023 19.572 Atomic orbital electron populations 1.22243 0.89774 1.04501 1.05075 1.22402 0.97796 0.97250 0.77310 0.84373 1.21690 1.00029 0.99891 0.92213 1.19525 0.97785 0.95891 0.90854 1.21400 1.35621 1.08861 0.91727 0.95791 1.26095 0.96564 1.01665 0.95091 1.70087 1.48339 1.42132 0.98917 0.85617 0.79067 0.78892 0.78867 1.18666 1.21596 1.15592 1.50755 1.28876 1.06672 1.17318 1.78890 1.18489 0.99942 1.09669 1.75765 1.11953 1.25324 1.05060 1.26214 1.01329 0.85673 0.99586 1.20010 0.91956 1.02190 0.82631 1.58530 1.14191 1.55893 1.09760 1.74657 1.13032 1.27668 1.00667 0.87205 0.90516 0.91249 0.91929 0.93519 0.94701 0.93789 0.92467 0.87035 0.90252 0.81426 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.14 71.98 0.66 -3.22 16 2 C 0.15 4.45 3.31 44.99 0.15 4.60 16 3 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 4 C -0.10 -3.69 4.81 30.60 0.15 -3.54 16 5 C 0.00 -0.11 3.80 29.85 0.11 0.00 16 6 C -0.54 -30.09 9.66 25.60 0.25 -29.84 16 7 H 0.02 1.51 7.99 -2.91 -0.02 1.49 16 8 C 0.00 0.14 5.47 84.66 0.46 0.60 16 9 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 10 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 14 N -0.12 -3.95 3.73 -169.57 -0.63 -4.58 16 15 N -0.08 -2.69 12.95 37.02 0.48 -2.21 16 16 N -0.31 -10.05 12.50 -51.26 -0.64 -10.69 16 17 C 0.16 4.37 7.88 138.55 1.09 5.46 16 18 C 0.17 2.98 7.41 85.56 0.63 3.61 16 19 N -0.85 -12.95 9.61 -190.00 -1.83 -14.78 16 20 N -0.31 -9.66 12.13 -51.20 -0.62 -10.28 16 21 H 0.11 2.45 6.57 -2.39 -0.02 2.44 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 27 H 0.04 1.68 5.99 -2.39 -0.01 1.66 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.37 3.27 9.08 -89.69 -0.81 2.46 16 32 H 0.35 5.32 8.99 -89.69 -0.81 4.52 16 Total: -1.00 -70.08 275.69 1.91 -68.17 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.53 Total: 12.39 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.50 Total: -22.33 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -2.94 Total: -101.55 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -70.08 1.91 -68.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.770 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds