Wall clock time and date at job start Sun Mar 29 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99133 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99087 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98794 * 3 2 1 7 7 C 1.37873 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.54830 * 7 2 1 9 9 C 1.50702 * 119.99618 * 9.55221 * 7 2 1 10 10 C 1.53003 * 109.46933 * 185.42739 * 9 7 2 11 11 C 1.53002 * 109.46945 * 299.99580 * 10 9 7 12 12 C 1.53005 * 109.47271 * 300.00268 * 11 10 9 13 13 N 1.46894 * 109.47416 * 180.02562 * 12 11 10 14 14 C 1.46892 * 111.00365 * 154.99774 * 13 12 11 15 15 C 1.54030 * 113.82191 * 253.50782 * 14 13 12 16 16 O 1.44441 * 85.43111 * 223.23467 * 15 14 13 17 17 C 1.44181 * 93.37795 * 24.08851 * 16 15 14 18 18 C 1.53001 * 109.47012 * 59.99840 * 12 11 10 19 19 C 1.52996 * 109.47360 * 65.42367 * 9 7 2 20 20 H 0.96998 * 119.99661 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47144 * 305.42218 * 9 7 2 22 22 H 1.08999 * 109.46753 * 180.02562 * 10 9 7 23 23 H 1.08993 * 109.47273 * 59.99485 * 10 9 7 24 24 H 1.08998 * 109.46901 * 59.99921 * 11 10 9 25 25 H 1.08996 * 109.46907 * 180.02562 * 11 10 9 26 26 H 1.09008 * 109.46989 * 300.00212 * 12 11 10 27 27 H 1.00906 * 110.99921 * 278.95377 * 13 12 11 28 28 H 1.09007 * 112.99912 * 25.33668 * 14 13 12 29 29 H 1.09007 * 113.86436 * 337.34677 * 15 14 13 30 30 H 1.09005 * 113.86609 * 109.04082 * 15 14 13 31 31 H 1.09002 * 113.86344 * 221.77097 * 17 16 15 32 32 H 1.08994 * 113.98357 * 90.07351 * 17 16 15 33 33 H 1.09002 * 109.46866 * 180.02562 * 18 12 11 34 34 H 1.08998 * 109.47440 * 60.00174 * 18 12 11 35 35 H 1.09008 * 109.47082 * 180.02562 * 19 9 7 36 36 H 1.09001 * 109.47366 * 299.99580 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0047 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4901 -0.2155 10 6 2.2326 -3.6630 -0.0345 11 6 3.3703 -3.5482 -1.0512 12 6 2.7931 -3.5766 -2.4679 13 7 3.8854 -3.4671 -3.4439 14 6 3.5029 -4.0624 -4.7312 15 6 4.1838 -5.4139 -5.0184 16 8 4.3770 -4.9013 -6.3549 17 6 4.3091 -3.5255 -5.9289 18 6 1.8273 -2.4038 -2.6487 19 6 0.6897 -2.5185 -1.6321 20 1 -0.4849 0.8401 -0.0004 21 1 0.4563 -2.5719 0.5088 22 1 1.6990 -4.6004 -0.1912 23 1 2.6438 -3.6427 0.9746 24 1 3.9039 -2.6107 -0.8950 25 1 4.0580 -4.3840 -0.9226 26 1 2.2594 -4.5142 -2.6241 27 1 4.1712 -2.5064 -3.5605 28 1 2.4250 -4.0693 -4.8937 29 1 5.1112 -5.5666 -4.4662 30 1 3.5086 -6.2680 -4.9655 31 1 3.7329 -2.8850 -6.5968 32 1 5.2737 -3.0983 -5.6552 33 1 1.4158 -2.4243 -3.6579 34 1 2.3609 -1.4663 -2.4925 35 1 0.1556 -3.4559 -1.7882 36 1 0.0016 -1.6830 -1.7610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:54 Heat of formation + Delta-G solvation = -31.744209 kcal Electronic energy + Delta-G solvation = -16205.107818 eV Core-core repulsion = 13689.473557 eV Total energy + Delta-G solvation = -2515.634260 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25747 -37.99217 -34.29345 -32.00614 -29.64870 -29.10549 -26.57268 -26.37932 -24.47781 -21.58839 -20.72714 -20.29005 -18.74667 -16.52015 -16.36527 -15.73845 -15.54735 -14.90961 -14.43121 -13.54419 -13.47721 -13.08890 -12.69810 -12.63365 -12.08149 -11.85540 -11.52209 -11.11644 -11.02562 -10.92175 -10.74928 -10.54191 -10.38815 -10.12467 -9.77738 -9.68335 -9.18580 -9.00699 -8.71047 -8.31379 -8.01421 -6.00863 -4.00212 3.27957 3.36663 3.39075 3.72139 4.32160 4.40235 4.44542 5.05739 5.25616 5.32086 5.40015 5.49942 5.52899 5.71217 5.88626 5.99075 6.02241 6.11784 6.29154 6.36259 6.43003 6.48035 6.66372 6.71225 6.86477 7.04966 7.11693 7.22085 7.40496 7.48086 7.63720 7.74806 7.92020 8.03942 8.48679 9.03127 9.61863 11.08660 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035075 B = 0.007267 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.101002 B = 3852.329756 C = 4174.856336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.041 3.959 10 C -0.107 4.107 11 C -0.092 4.092 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.018 3.982 15 C 0.045 3.955 16 O -0.388 6.388 17 C 0.032 3.968 18 C -0.129 4.129 19 C -0.098 4.098 20 H 0.258 0.742 21 H 0.031 0.969 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.344 0.656 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -6.475 -7.655 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.145 4.145 11 C -0.130 4.130 12 C -0.018 4.018 13 N -0.309 5.309 14 C -0.093 4.093 15 C -0.033 4.033 16 O -0.306 6.306 17 C -0.045 4.045 18 C -0.168 4.168 19 C -0.136 4.136 20 H 0.068 0.932 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.014 -7.049 -7.698 12.046 hybrid contribution -0.321 1.812 -0.225 1.854 sum 5.692 -5.237 -7.922 11.072 Atomic orbital electron populations 1.69968 1.05908 1.26274 1.50770 1.24950 0.94671 0.98831 0.95434 0.86770 0.80201 0.84330 0.77885 1.20905 1.21425 1.19891 1.21150 0.93945 0.90750 1.48218 0.92533 1.18706 0.94064 0.92295 0.92676 1.21558 0.97061 0.98408 0.97504 1.21355 0.97676 1.01270 0.92739 1.21666 0.89849 0.97929 0.92307 1.60909 1.38655 1.24006 1.07380 1.24856 0.99309 0.95568 0.89547 1.24212 1.00147 0.97040 0.81901 1.89678 1.95223 1.18927 1.26764 1.24225 0.99858 0.85818 0.94632 1.22068 0.98419 0.99072 0.97246 1.21383 0.96377 0.98834 0.97046 0.93198 0.95110 0.94944 0.93282 0.91227 0.93870 0.91925 0.83669 0.89987 0.89369 0.89694 0.89483 0.89648 0.95302 0.90834 0.96388 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 12.16 55.43 0.67 -24.50 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.88 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -13.06 6.63 -34.44 -0.23 -13.29 16 8 H 0.06 1.47 6.53 -52.49 -0.34 1.12 16 9 C 0.04 0.98 2.45 -91.77 -0.22 0.76 16 10 C -0.11 -2.17 5.42 -26.73 -0.14 -2.31 16 11 C -0.09 -1.69 5.30 -26.73 -0.14 -1.83 16 12 C 0.09 1.55 2.33 -67.71 -0.16 1.39 16 13 N -0.68 -9.81 6.31 -106.66 -0.67 -10.49 16 14 C 0.02 0.24 4.05 -66.64 -0.27 -0.03 16 15 C 0.04 0.55 9.04 37.64 0.34 0.89 16 16 O -0.39 -5.40 12.46 -35.23 -0.44 -5.83 16 17 C 0.03 0.38 8.82 37.64 0.33 0.71 16 18 C -0.13 -2.50 4.94 -26.73 -0.13 -2.63 16 19 C -0.10 -2.19 5.29 -26.73 -0.14 -2.33 16 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 21 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.06 7.85 -51.92 -0.41 0.65 16 27 H 0.34 4.88 8.32 -39.29 -0.33 4.56 16 28 H 0.08 1.12 7.49 -51.92 -0.39 0.73 16 29 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.51 7.71 -51.93 -0.40 0.11 16 34 H 0.07 1.57 7.20 -51.93 -0.37 1.19 16 35 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.07 1.79 6.90 -51.93 -0.36 1.44 16 LS Contribution 281.36 15.07 4.24 4.24 Total: -1.00 -27.54 281.36 -7.96 -35.50 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.88 Total: 2.37 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.86 Total: -17.09 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.00 Total: -34.98 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.44 Total: -5.83 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.54 -7.96 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.758 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds