Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99868 * 3 2 1 5 5 H 1.48495 * 109.47267 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47057 * 150.00101 * 3 2 1 7 7 C 1.37873 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00553 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17465 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93645 * 139.66765 * 10 9 7 12 12 C 1.46898 * 111.00024 * 221.29650 * 11 10 9 13 13 C 1.52996 * 109.46866 * 175.20695 * 12 11 10 14 14 C 1.53179 * 109.54333 * 184.87844 * 13 12 11 15 15 C 1.53094 * 109.16683 * 183.15648 * 14 13 12 16 16 O 1.42901 * 109.41400 * 57.60639 * 15 14 13 17 17 C 1.42905 * 114.10127 * 298.84411 * 16 15 14 18 18 C 1.53095 * 109.41355 * 61.15982 * 17 16 15 19 19 C 1.47482 * 87.83600 * 332.99039 * 11 10 9 20 20 H 0.97006 * 119.99987 * 0.02562 * 1 2 3 21 21 H 1.09001 * 113.25822 * 47.04419 * 9 7 2 22 22 H 1.08997 * 113.47504 * 24.89943 * 10 9 7 23 23 H 1.09007 * 113.47627 * 254.43672 * 10 9 7 24 24 H 1.08997 * 109.47190 * 55.20799 * 12 11 10 25 25 H 1.09006 * 109.46875 * 295.20738 * 12 11 10 26 26 H 1.08996 * 109.54796 * 305.14783 * 13 12 11 27 27 H 1.09001 * 109.52404 * 303.06248 * 14 13 12 28 28 H 1.08997 * 109.52399 * 63.24945 * 14 13 12 29 29 H 1.09007 * 109.47561 * 297.62962 * 15 14 13 30 30 H 1.09002 * 109.48288 * 177.59264 * 15 14 13 31 31 H 1.08997 * 109.48225 * 301.17842 * 17 16 15 32 32 H 1.08995 * 109.48363 * 181.14036 * 17 16 15 33 33 H 1.08994 * 109.52046 * 182.49028 * 18 17 16 34 34 H 1.08999 * 109.52404 * 62.29455 * 18 17 16 35 35 H 1.09000 * 113.47469 * 141.77486 * 19 11 10 36 36 H 1.09000 * 113.47639 * 272.24412 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.1495 -3.7438 -0.0016 11 7 1.2067 -4.3588 0.9513 12 6 1.9244 -5.0872 2.0060 13 6 0.9223 -5.6084 3.0380 14 6 1.6767 -6.2621 4.1999 15 6 0.6659 -6.8500 5.1881 16 8 -0.1708 -7.7889 4.5096 17 6 -0.9365 -7.2241 3.4433 18 6 0.0100 -6.6514 2.3850 19 6 0.8544 -2.9972 1.3953 20 1 -0.4850 0.8401 -0.0004 21 1 0.4451 -2.5302 -0.7350 22 1 3.1386 -3.5653 0.4202 23 1 2.1869 -4.2525 -0.9649 24 1 2.6323 -4.4168 2.4934 25 1 2.4627 -5.9267 1.5660 26 1 0.3203 -4.7805 3.4123 27 1 2.3167 -7.0572 3.8174 28 1 2.2869 -5.5135 4.7052 29 1 0.0528 -6.0486 5.6008 30 1 1.1975 -7.3538 5.9954 31 1 -1.5705 -6.4278 3.8331 32 1 -1.5592 -7.9975 2.9936 33 1 -0.5718 -6.1811 1.5924 34 1 0.6163 -7.4543 1.9658 35 1 -0.2058 -2.8731 1.6157 36 1 1.4979 -2.6194 2.1898 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202551436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = -47.835514 kcal Electronic energy + Delta-G solvation = -15854.739736 eV Core-core repulsion = 13338.407704 eV Total energy + Delta-G solvation = -2516.332032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01110 -39.86900 -35.72657 -34.48801 -31.99780 -30.82523 -27.88225 -26.59011 -25.39882 -24.42357 -22.74150 -20.92690 -20.42211 -18.67023 -17.11819 -16.96601 -16.72284 -16.38885 -16.02664 -15.64957 -15.30656 -14.98441 -14.48137 -13.81360 -13.60842 -13.35543 -13.14694 -13.06098 -12.81015 -12.56244 -12.31098 -12.22915 -11.80112 -11.65309 -11.51411 -11.18093 -11.05163 -10.83844 -10.52850 -10.39587 -9.67492 -8.16547 -6.28065 1.42021 1.42523 1.52910 2.41410 2.97942 3.12864 3.28341 3.68453 3.89911 3.93996 4.12366 4.26065 4.32625 4.34732 4.44865 4.47587 4.61075 4.67411 4.74064 4.80876 4.85631 4.88174 4.91032 4.94467 5.00150 5.16820 5.22571 5.31803 5.39346 5.54495 5.61369 5.83895 6.26730 6.28689 6.40056 6.81295 7.40622 8.93314 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049612 B = 0.005483 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.241180 B = 5105.852058 C = 5133.599163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.020 3.980 10 C 0.008 3.992 11 N -0.478 5.478 12 C 0.029 3.971 13 C -0.081 4.081 14 C -0.145 4.145 15 C 0.059 3.941 16 O -0.400 6.400 17 C 0.061 3.939 18 C -0.135 4.135 19 C 0.021 3.979 20 H 0.263 0.737 21 H 0.030 0.970 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -11.835 8.335 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.121 4.121 11 N -0.200 5.200 12 C -0.100 4.100 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.017 4.017 16 O -0.320 6.320 17 C -0.016 4.016 18 C -0.173 4.173 19 C -0.108 4.108 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.515 -12.421 8.181 14.950 hybrid contribution 0.829 1.922 0.075 2.094 sum 2.344 -10.499 8.256 13.561 Atomic orbital electron populations 1.70097 1.07556 1.27612 1.50855 1.25832 0.95608 1.02726 0.94277 0.85555 0.78709 0.78998 0.78403 1.19917 1.20938 1.18996 1.21375 0.92975 0.91510 1.51098 0.92349 1.20056 0.94534 0.92111 0.93210 1.23817 0.95415 0.95802 0.97043 1.68782 1.27673 1.12528 1.11027 1.22677 0.95622 0.98394 0.93266 1.21071 0.96523 0.97385 0.94967 1.22191 0.98753 1.00884 0.96440 1.22694 0.91831 0.92793 0.94377 1.87869 1.58922 1.36830 1.48336 1.22670 0.92858 0.98774 0.87290 1.22040 0.98595 0.98109 0.98530 1.23709 0.98735 0.88750 0.99655 0.92825 0.95212 0.92244 0.90908 0.94845 0.90395 0.92808 0.90648 0.90199 0.93146 0.86948 0.93372 0.87573 0.91326 0.91389 0.93736 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 13.26 21.45 0.28 -53.88 16 2 C 0.01 0.82 5.46 84.65 0.46 1.29 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.53 -29.14 8.82 25.60 0.23 -28.92 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 9 C 0.02 1.02 3.77 -11.19 -0.04 0.98 16 10 C 0.01 0.33 7.28 83.58 0.61 0.94 16 11 N -0.48 -18.86 5.92 -927.82 -5.49 -24.35 16 12 C 0.03 0.93 4.15 86.30 0.36 1.29 16 13 C -0.08 -2.25 2.36 -10.67 -0.03 -2.28 16 14 C -0.14 -3.20 5.42 30.69 0.17 -3.03 16 15 C 0.06 1.23 6.84 72.01 0.49 1.72 16 16 O -0.40 -9.87 10.77 -148.98 -1.60 -11.48 16 17 C 0.06 1.42 6.84 72.01 0.49 1.91 16 18 C -0.13 -3.59 5.27 30.69 0.16 -3.43 16 19 C 0.02 0.97 6.77 83.58 0.57 1.53 16 20 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 21 H 0.03 1.70 8.11 -2.39 -0.02 1.68 16 22 H 0.06 2.40 7.81 -2.39 -0.02 2.38 16 23 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 24 H 0.03 1.10 7.56 -2.39 -0.02 1.08 16 25 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.05 1.69 7.76 -2.39 -0.02 1.67 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.06 7.86 -2.39 -0.02 2.05 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 Total: -1.00 -60.08 288.01 -0.30 -60.38 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.02 Total: 12.25 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.47 Total: -28.00 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -5.21 Total: -78.23 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.60 Total: -11.48 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -60.08 -0.30 -60.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202551436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.544 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds