Wall clock time and date at job start Sun Mar 29 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48507 * 109.47152 * 270.00148 * 3 2 1 5 5 H 1.48504 * 109.47024 * 29.99851 * 3 2 1 6 6 H 1.48498 * 109.47383 * 149.99941 * 3 2 1 7 7 C 1.38805 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00636 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64375 * 359.97308 * 9 7 2 11 11 C 1.54912 * 104.83500 * 155.91698 * 10 9 7 12 12 C 1.55162 * 101.57717 * 37.00946 * 11 10 9 13 13 H 1.09002 * 110.72059 * 82.86237 * 12 11 10 14 14 O 1.42901 * 110.71712 * 205.95604 * 12 11 10 15 15 C 1.42898 * 114.00226 * 207.55524 * 14 12 11 16 16 C 1.52995 * 109.47558 * 180.02562 * 15 14 12 17 17 C 1.53776 * 113.61951 * 272.50290 * 16 15 14 18 18 C 1.53781 * 87.08375 * 220.01877 * 17 16 15 19 19 C 1.53782 * 87.08049 * 25.43043 * 18 17 16 20 20 C 1.47018 * 125.65550 * 180.02562 * 9 7 2 21 21 H 0.96995 * 120.00058 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.37241 * 37.08067 * 10 9 7 23 23 H 1.08998 * 110.46196 * 274.80215 * 10 9 7 24 24 H 1.08999 * 111.00244 * 278.93675 * 11 10 9 25 25 H 1.08996 * 111.00556 * 155.07846 * 11 10 9 26 26 H 1.09003 * 109.47207 * 300.00554 * 15 14 12 27 27 H 1.09000 * 109.46989 * 60.00297 * 15 14 12 28 28 H 1.09007 * 112.84874 * 43.80916 * 16 15 14 29 29 H 1.09006 * 113.60871 * 334.56719 * 17 16 15 30 30 H 1.09000 * 113.61591 * 105.46190 * 17 16 15 31 31 H 1.09005 * 113.60793 * 270.88237 * 18 17 16 32 32 H 1.08998 * 113.61626 * 139.98066 * 18 17 16 33 33 H 1.09006 * 113.61240 * 220.02143 * 19 18 17 34 34 H 1.08998 * 113.61852 * 89.12005 * 19 18 17 35 35 H 1.09001 * 109.88087 * 61.59202 * 20 9 7 36 36 H 1.09003 * 109.87911 * 300.43354 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 -0.1413 -2.5332 0.0006 11 6 -0.4014 -3.9327 -0.6105 12 6 0.7787 -4.7524 -0.0248 13 1 0.5462 -5.0974 0.9826 14 8 1.0980 -5.8564 -0.8742 15 6 1.6802 -6.9673 -0.1893 16 6 1.9798 -8.0841 -1.1912 17 6 0.7958 -9.0374 -1.4234 18 6 1.8221 -10.1825 -1.4379 19 6 2.7216 -9.2819 -0.5749 20 6 1.9320 -3.7274 0.0016 21 1 -0.4850 0.8400 0.0004 22 1 -0.5992 -1.7593 -0.6155 23 1 -0.5289 -2.4857 1.0182 24 1 -0.3517 -3.8992 -1.6989 25 1 -1.3587 -4.3330 -0.2768 26 1 2.6066 -6.6528 0.2915 27 1 0.9849 -7.3333 0.5661 28 1 2.4332 -7.7165 -2.1118 29 1 0.1016 -9.0838 -0.5843 30 1 0.2954 -8.8873 -2.3801 31 1 2.2315 -10.3894 -2.4267 32 1 1.4813 -11.0809 -0.9233 33 1 3.7762 -9.3292 -0.8466 34 1 2.5541 -9.3952 0.4962 35 1 2.5284 -3.8636 0.9037 36 1 2.5585 -3.8514 -0.8817 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206177560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:53 Heat of formation + Delta-G solvation = -6.426438 kcal Electronic energy + Delta-G solvation = -15605.901953 eV Core-core repulsion = 13091.365554 eV Total energy + Delta-G solvation = -2514.536399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17625 -37.87747 -35.59720 -32.16021 -29.37337 -28.32439 -26.81148 -25.67649 -24.29835 -22.65612 -20.25736 -20.08632 -19.32497 -16.92634 -16.52426 -15.76158 -15.13613 -14.66385 -14.50334 -14.03652 -13.60017 -12.93557 -12.55499 -12.36954 -12.16185 -11.93547 -11.63249 -11.32359 -11.00536 -10.94311 -10.73984 -10.65126 -10.44798 -10.29740 -10.08980 -10.07702 -9.73026 -9.49343 -8.99912 -8.62644 -6.80719 -5.62658 -3.04476 3.42380 3.46834 3.49099 3.93179 4.52158 4.52966 4.60868 4.72505 4.87243 5.35839 5.39400 5.49936 5.50765 5.53734 5.61487 5.63689 5.71243 5.76643 5.81025 5.84217 5.90755 5.98584 6.17054 6.36835 6.43501 6.58645 6.64194 6.71844 6.78506 7.52663 7.65370 7.73526 7.88707 8.38550 9.24520 9.85327 10.50195 11.41507 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.067939 B = 0.004976 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.035892 B = 5626.208053 C = 5902.515745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.138 4.138 12 C 0.076 3.924 13 H 0.061 0.939 14 O -0.377 6.377 15 C 0.071 3.929 16 C -0.108 4.108 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.134 4.134 20 C 0.118 3.882 21 H 0.252 0.748 22 H 0.110 0.890 23 H 0.013 0.987 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.019 0.981 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -16.770 -0.825 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.177 4.177 12 C 0.018 3.982 13 H 0.079 0.921 14 O -0.296 6.296 15 C -0.006 4.006 16 C -0.126 4.126 17 C -0.171 4.171 18 C -0.181 4.181 19 C -0.172 4.172 20 C -0.009 4.009 21 H 0.063 0.937 22 H 0.128 0.872 23 H 0.031 0.969 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.037 0.963 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.611 -16.545 -1.010 16.653 hybrid contribution 0.572 0.822 0.411 1.082 sum 2.183 -15.723 -0.600 15.885 Atomic orbital electron populations 1.69784 1.04906 1.24777 1.57778 1.24791 0.95744 0.97709 1.02476 0.86051 0.78487 0.83240 0.77595 1.21554 1.21634 1.20748 1.19102 0.90550 0.82404 1.42926 0.90466 1.44394 1.01982 0.99616 1.86950 1.21952 0.84780 0.92262 0.98274 1.23146 0.95305 0.97927 1.01292 1.23215 0.96339 0.85839 0.92827 0.92146 1.87926 1.81523 1.24834 1.35279 1.22486 0.96839 0.87023 0.94288 1.22541 0.97673 0.92789 0.99645 1.22946 0.96355 0.95481 1.02319 1.22815 0.97839 0.97162 1.00254 1.22908 0.98977 0.95553 0.99736 1.21693 0.94436 0.86603 0.98160 0.93711 0.87220 0.96896 0.91186 0.92099 0.93550 0.93765 0.88437 0.90206 0.91359 0.90254 0.91596 0.91338 0.90098 0.96317 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.09 55.49 0.56 -26.88 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.40 10.27 -15.06 -0.15 -6.56 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -16.28 3.39 -170.08 -0.58 -16.85 16 10 C 0.15 3.85 5.89 -2.53 -0.01 3.84 16 11 C -0.14 -2.85 6.81 -24.58 -0.17 -3.02 16 12 C 0.08 1.48 3.42 -24.90 -0.09 1.39 16 13 H 0.06 1.09 7.85 -51.93 -0.41 0.69 16 14 O -0.38 -6.76 10.08 -35.23 -0.36 -7.12 16 15 C 0.07 0.99 5.63 37.15 0.21 1.20 16 16 C -0.11 -1.27 4.01 -89.81 -0.36 -1.63 16 17 C -0.13 -1.40 7.63 -25.92 -0.20 -1.60 16 18 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 19 C -0.13 -1.26 7.64 -25.92 -0.20 -1.46 16 20 C 0.12 2.67 7.02 -3.07 -0.02 2.65 16 21 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.11 3.08 5.88 -51.93 -0.31 2.78 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 28 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 LS Contribution 289.48 15.07 4.36 4.36 Total: -1.00 -30.61 289.48 -8.47 -39.08 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.14 Total: -2.93 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.30 Total: -7.09 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.02 Total: -43.73 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.36 Total: -7.12 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.61 -8.47 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206177560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.653 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds