Wall clock time and date at job start Sun Mar 29 2020 21:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48495 * 109.46982 * 95.01205 * 3 2 1 5 5 H 1.48499 * 109.47145 * 215.01210 * 3 2 1 6 6 H 1.48496 * 109.46922 * 335.01212 * 3 2 1 7 7 C 1.38817 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99598 * 173.14999 * 7 2 1 9 9 N 1.36929 * 119.99830 * 353.14454 * 7 2 1 10 10 C 1.47025 * 125.65197 * 5.74989 * 9 7 2 11 11 C 1.54332 * 107.26803 * 178.84694 * 10 9 7 12 12 C 1.55157 * 103.01782 * 338.13617 * 11 10 9 13 13 H 1.09000 * 111.00728 * 277.23337 * 12 11 10 14 14 O 1.42905 * 111.00247 * 153.38381 * 12 11 10 15 15 C 1.42904 * 113.99884 * 156.34977 * 14 12 11 16 16 C 1.53000 * 109.46959 * 180.02562 * 15 14 12 17 17 C 1.53781 * 113.60917 * 272.49471 * 16 15 14 18 18 C 1.53782 * 87.07876 * 220.01978 * 17 16 15 19 19 C 1.53775 * 87.08109 * 25.43498 * 18 17 16 20 20 C 1.47427 * 125.64612 * 186.04865 * 9 7 2 21 21 H 0.96992 * 120.00787 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.87561 * 298.38929 * 10 9 7 23 23 H 1.09000 * 109.88314 * 59.54842 * 10 9 7 24 24 H 1.09004 * 110.85102 * 219.67202 * 11 10 9 25 25 H 1.08997 * 110.51920 * 96.44847 * 11 10 9 26 26 H 1.09006 * 109.46926 * 299.99826 * 15 14 12 27 27 H 1.09002 * 109.47120 * 59.99977 * 15 14 12 28 28 H 1.08992 * 112.85038 * 43.80069 * 16 15 14 29 29 H 1.08993 * 113.61929 * 334.56794 * 17 16 15 30 30 H 1.09003 * 113.61206 * 105.47717 * 17 16 15 31 31 H 1.09003 * 113.61539 * 270.88671 * 18 17 16 32 32 H 1.08998 * 113.61350 * 139.98521 * 18 17 16 33 33 H 1.09006 * 113.61249 * 220.01714 * 19 18 17 34 34 H 1.08997 * 113.61588 * 89.11633 * 19 18 17 35 35 H 1.09000 * 110.36594 * 322.93496 * 20 9 7 36 36 H 1.08993 * 110.36560 * 85.15100 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6035 1.9853 1.3947 5 1 3.4907 1.4732 -0.8033 6 1 1.3986 2.6809 -0.5914 7 6 2.0103 -1.2022 -0.0005 8 1 3.0845 -1.2053 -0.1121 9 7 1.3330 -2.3838 0.1405 10 6 -0.1290 -2.5340 0.1811 11 6 -0.4310 -4.0410 0.3218 12 6 0.8658 -4.7082 -0.2077 13 1 0.8570 -4.7704 -1.2959 14 8 1.0524 -5.9995 0.3755 15 6 1.8675 -6.8770 -0.4040 16 6 1.9977 -8.2227 0.3122 17 6 3.1604 -8.2756 1.3172 18 6 3.4239 -9.7058 0.8172 19 6 2.7571 -9.2831 -0.5024 20 6 1.9491 -3.7156 0.2829 21 1 -0.4851 0.8399 0.0004 22 1 -0.5337 -1.9915 1.0355 23 1 -0.5664 -2.1548 -0.7424 24 1 -1.2877 -4.3238 -0.2899 25 1 -0.5994 -4.3009 1.3669 26 1 1.4074 -7.0286 -1.3806 27 1 2.8561 -6.4363 -0.5326 28 1 1.0512 -8.5794 0.7183 29 1 3.9664 -7.5781 1.0896 30 1 2.8403 -8.2290 2.3581 31 1 2.8679 -10.4684 1.3627 32 1 4.4825 -9.9444 0.7148 33 1 2.1114 -10.0499 -0.9305 34 1 3.4529 -8.8610 -1.2275 35 1 2.8411 -3.7894 -0.3392 36 1 2.1982 -3.9086 1.3263 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206177561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:54 Heat of formation + Delta-G solvation = -25.718711 kcal Electronic energy + Delta-G solvation = -15636.312141 eV Core-core repulsion = 13120.939166 eV Total energy + Delta-G solvation = -2515.372975 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25647 -39.27472 -37.22945 -34.19411 -31.23706 -29.65382 -28.50077 -26.48765 -26.25191 -23.60323 -22.05947 -21.86213 -20.23534 -18.95878 -17.98131 -16.78675 -16.57677 -16.20922 -16.05263 -15.49277 -15.11560 -14.39634 -13.99595 -13.97485 -13.60375 -13.30293 -13.06877 -12.91953 -12.74523 -12.52001 -12.20789 -12.09017 -12.04018 -11.78943 -11.47134 -11.38972 -11.14945 -11.08267 -10.72214 -10.40888 -8.94493 -7.88774 -5.25000 1.45429 1.48842 1.56578 2.44771 2.66190 3.29773 3.68725 3.71941 3.78823 3.85826 3.95016 4.00222 4.09008 4.16036 4.44728 4.56051 4.58838 4.65476 4.72241 4.88224 4.89731 4.93575 4.97323 5.01461 5.08493 5.12214 5.16391 5.37961 5.41548 5.60766 5.62567 5.69388 6.14013 6.36732 7.06015 7.71995 8.37558 9.22292 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.054640 B = 0.005200 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.323746 B = 5383.241643 C = 5715.814774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.125 4.125 12 C 0.090 3.910 13 H 0.075 0.925 14 O -0.386 6.386 15 C 0.064 3.936 16 C -0.113 4.113 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.126 4.126 20 C 0.115 3.885 21 H 0.249 0.751 22 H 0.014 0.986 23 H 0.017 0.983 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 -17.828 -0.984 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.163 4.163 12 C 0.031 3.969 13 H 0.093 0.907 14 O -0.305 6.305 15 C -0.013 4.013 16 C -0.131 4.131 17 C -0.180 4.180 18 C -0.172 4.172 19 C -0.163 4.163 20 C -0.010 4.010 21 H 0.058 0.942 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.263 -17.693 -0.832 18.218 hybrid contribution 0.290 1.411 -0.090 1.444 sum 4.553 -16.281 -0.923 16.931 Atomic orbital electron populations 1.70178 1.06415 1.25603 1.57592 1.25718 0.96649 1.01128 1.02076 0.85055 0.77619 0.78687 0.77717 1.21156 1.19261 1.21804 1.19461 0.91692 0.83742 1.43063 0.89962 1.44661 1.02538 1.02113 1.86074 1.20935 0.83846 0.90995 0.98192 1.22803 0.96871 0.94766 1.01863 1.23062 0.95152 0.82114 0.96531 0.90707 1.87872 1.70881 1.23144 1.48579 1.22768 0.93980 0.90037 0.94466 1.22608 0.99081 0.93260 0.98193 1.23003 0.97886 0.98087 0.99018 1.22794 1.01531 0.96100 0.96726 1.22897 0.99110 0.97383 0.96914 1.22057 0.95688 0.85491 0.97809 0.94157 0.96821 0.96480 0.89262 0.91106 0.92551 0.93476 0.88814 0.90600 0.92038 0.89338 0.90479 0.90099 0.89568 0.93901 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.36 21.65 0.22 -57.94 16 2 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 3 Si 0.98 46.33 29.56 68.60 2.03 48.36 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -14.57 10.26 84.04 0.86 -13.71 16 8 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 9 N -0.63 -33.94 3.39 -691.97 -2.35 -36.29 16 10 C 0.19 9.59 5.38 86.73 0.47 10.06 16 11 C -0.12 -4.97 6.68 31.79 0.21 -4.75 16 12 C 0.09 3.38 3.49 31.99 0.11 3.49 16 13 H 0.08 2.66 7.90 -2.39 -0.02 2.64 16 14 O -0.39 -12.90 10.15 -148.98 -1.51 -14.41 16 15 C 0.06 1.65 5.66 71.98 0.41 2.06 16 16 C -0.11 -2.39 4.01 -10.27 -0.04 -2.43 16 17 C -0.14 -2.89 7.63 31.12 0.24 -2.65 16 18 C -0.13 -2.03 8.08 31.12 0.25 -1.78 16 19 C -0.13 -1.97 7.64 31.12 0.24 -1.74 16 20 C 0.12 5.11 6.97 86.86 0.61 5.72 16 21 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 22 H 0.01 0.78 7.39 -2.39 -0.02 0.77 16 23 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 1.33 8.11 -2.38 -0.02 1.31 16 27 H 0.05 1.22 7.84 -2.39 -0.02 1.21 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.61 7.90 -2.39 -0.02 1.59 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.90 290.27 3.23 -62.67 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.02 Total: 6.51 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.82 Total: -8.90 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -2.12 Total: -94.23 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.51 Total: -14.41 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -65.90 3.23 -62.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206177561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.956 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds