Wall clock time and date at job start Sun Mar 29 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 13 13 H 1.09003 * 110.71834 * 82.69257 * 12 11 10 14 14 O 1.42893 * 110.72052 * 205.96682 * 12 11 10 15 15 C 1.42899 * 114.00135 * 204.97568 * 14 12 11 16 16 C 1.53003 * 109.47341 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47186 * 180.02562 * 16 15 14 18 18 C 1.53009 * 117.50140 * 243.62254 * 17 16 15 19 19 C 1.52997 * 60.00049 * 252.51303 * 18 17 16 20 20 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 21 21 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 22 22 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 23 23 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 24 24 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 25 25 H 1.08997 * 110.93832 * 155.28913 * 11 10 9 26 26 H 1.09000 * 109.47264 * 300.00281 * 15 14 12 27 27 H 1.09002 * 109.47213 * 60.00508 * 15 14 12 28 28 H 1.09000 * 109.47128 * 300.00312 * 16 15 14 29 29 H 1.09002 * 109.46595 * 60.00077 * 16 15 14 30 30 H 1.08996 * 115.55233 * 29.33421 * 17 16 15 31 31 H 1.08998 * 117.49356 * 0.02562 * 18 17 16 32 32 H 1.08998 * 117.49998 * 145.02299 * 18 17 16 33 33 H 1.09000 * 117.49952 * 252.51189 * 19 18 17 34 34 H 1.09002 * 117.50482 * 107.49287 * 19 18 17 35 35 H 1.08999 * 109.88184 * 300.44569 * 20 9 7 36 36 H 1.09000 * 109.87675 * 61.44592 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 6 0.9848 -4.6199 -1.1784 13 1 0.2095 -5.0425 -0.5393 14 8 1.7287 -5.6547 -1.8247 15 6 1.8476 -6.8527 -1.0548 16 6 2.6592 -7.8851 -1.8399 17 6 2.7859 -9.1680 -1.0160 18 6 4.1895 -9.5900 -0.5769 19 6 3.4660 -10.3683 -1.6775 20 6 1.9207 -3.7004 -0.3661 21 1 -0.4850 -0.8356 0.0856 22 1 -0.6627 -2.3720 -0.7823 23 1 0.2237 -1.4797 -2.0563 24 1 1.0380 -3.5161 -3.0722 25 1 -0.6095 -4.0046 -2.5522 26 1 2.3534 -6.6320 -0.1149 27 1 0.8545 -7.2518 -0.8481 28 1 2.1538 -8.1060 -2.7801 29 1 3.6522 -7.4858 -2.0463 30 1 1.9620 -9.3705 -0.3317 31 1 5.0226 -8.9533 -0.8747 32 1 4.2893 -10.0701 0.3966 33 1 3.0897 -11.3604 -1.4282 34 1 3.8232 -10.2441 -2.6999 35 1 2.9412 -3.7874 -0.7390 36 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224758387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:47 Heat of formation + Delta-G solvation = -26.942004 kcal Electronic energy + Delta-G solvation = -15404.923924 eV Core-core repulsion = 12889.497903 eV Total energy + Delta-G solvation = -2515.426021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14387 -38.66826 -37.53100 -34.45604 -31.88291 -30.88462 -28.85906 -26.33643 -24.37372 -23.20961 -22.15496 -22.07850 -21.21748 -19.68050 -18.03311 -16.82887 -16.77966 -16.20979 -15.80389 -15.61529 -15.11769 -14.88188 -14.70723 -14.05101 -13.92001 -13.06103 -12.82058 -12.63849 -12.55458 -12.49178 -12.35053 -12.25774 -12.08510 -11.88246 -11.62841 -11.59288 -11.16575 -10.84339 -10.64774 -10.47490 -9.09718 -8.38140 -5.37511 1.56553 1.65409 1.82179 2.46178 2.64558 2.91673 3.14641 3.50266 3.66693 3.79964 3.91256 3.96816 4.01466 4.06037 4.19878 4.31455 4.37707 4.46270 4.53726 4.72148 4.78097 4.80723 4.82145 4.88969 5.00443 5.01910 5.05441 5.08610 5.22935 5.26630 5.36430 5.59234 6.24717 6.26859 6.84523 7.65071 8.21392 8.95459 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055469 B = 0.004754 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.667519 B = 5888.896155 C = 6199.047092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.076 4.076 3 Si 1.123 2.877 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.353 4.353 8 H 0.059 0.941 9 N -0.627 5.627 10 C 0.146 3.854 11 C -0.115 4.115 12 C 0.094 3.906 13 H 0.084 0.916 14 O -0.388 6.388 15 C 0.057 3.943 16 C -0.081 4.081 17 C -0.161 4.161 18 C -0.186 4.186 19 C -0.171 4.171 20 C 0.113 3.887 21 H 0.258 0.742 22 H 0.016 0.984 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.025 0.975 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -18.534 -3.395 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.272 4.272 3 Si 0.947 3.053 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.481 4.481 8 H 0.077 0.923 9 N -0.356 5.356 10 C 0.021 3.979 11 C -0.153 4.153 12 C 0.036 3.964 13 H 0.102 0.898 14 O -0.307 6.307 15 C -0.019 4.019 16 C -0.118 4.118 17 C -0.179 4.179 18 C -0.223 4.223 19 C -0.207 4.207 20 C -0.012 4.012 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.043 0.957 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.875 -16.830 -3.608 17.643 hybrid contribution 0.037 -1.446 0.678 1.597 sum 3.912 -18.275 -2.930 18.917 Atomic orbital electron populations 1.70839 1.07476 1.29705 1.50904 1.27216 0.96620 1.04353 0.99013 0.82771 0.74021 0.71601 0.76939 1.20020 1.21356 1.21048 1.20098 0.99307 0.89258 1.39419 0.92320 1.44771 1.31796 1.02076 1.56928 1.21540 0.88975 0.95839 0.91529 1.22844 1.01744 0.93422 0.97296 1.22901 0.92201 0.87234 0.94086 0.89821 1.87874 1.74924 1.23827 1.44092 1.22700 1.00060 0.84608 0.94508 1.21011 1.00133 0.92172 0.98491 1.22167 0.97234 0.95110 1.03373 1.23140 0.94938 1.04139 1.00058 1.23050 1.03514 0.96077 0.98107 1.21877 0.97134 0.85372 0.96859 0.93145 0.96643 0.95394 0.90887 0.87951 0.93728 0.91880 0.90584 0.91906 0.87006 0.89094 0.87950 0.87443 0.88504 0.95664 0.96386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 12.82 21.65 0.28 -59.07 16 2 C -0.08 -4.54 5.09 84.86 0.43 -4.11 16 3 Si 1.12 52.71 30.00 68.60 2.06 54.77 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.35 -21.13 10.05 84.03 0.84 -20.29 16 8 H 0.06 3.51 7.96 -2.91 -0.02 3.49 16 9 N -0.63 -34.20 3.33 -691.57 -2.30 -36.50 16 10 C 0.15 7.19 5.22 86.93 0.45 7.64 16 11 C -0.11 -4.31 6.82 32.06 0.22 -4.09 16 12 C 0.09 3.41 3.39 31.78 0.11 3.52 16 13 H 0.08 2.72 7.89 -2.39 -0.02 2.70 16 14 O -0.39 -12.77 10.07 -148.98 -1.50 -14.27 16 15 C 0.06 1.45 5.77 71.98 0.42 1.87 16 16 C -0.08 -1.70 5.86 30.59 0.18 -1.52 16 17 C -0.16 -2.74 5.74 -10.79 -0.06 -2.80 16 18 C -0.19 -2.94 10.18 30.60 0.31 -2.63 16 19 C -0.17 -2.42 10.25 30.59 0.31 -2.11 16 20 C 0.11 5.13 7.01 86.73 0.61 5.74 16 21 H 0.26 16.29 5.83 -92.71 -0.54 15.75 16 22 H 0.02 0.80 6.84 -2.39 -0.02 0.79 16 23 H 0.03 1.50 7.73 -2.38 -0.02 1.49 16 24 H 0.07 2.77 8.14 -2.39 -0.02 2.76 16 25 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.38 8.11 -2.39 -0.02 1.37 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.43 7.88 -2.39 -0.02 1.41 16 30 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 31 H 0.09 1.51 8.03 -2.39 -0.02 1.49 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.78 294.46 3.61 -65.17 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.25 Total: 8.68 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.82 Total: -18.78 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -2.02 Total: -95.57 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.50 Total: -14.27 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.06 Total: 54.77 kcal Total: -68.78 3.61 -65.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224758387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.229 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds