Wall clock time and date at job start Sun Mar 29 2020 21:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 N 1.28785 * 125.44901 * 59.69673 * 13 3 2 15 15 N 1.28990 * 108.72904 * 179.82876 * 14 13 3 16 16 C 1.33310 * 107.35707 * 0.42620 * 15 14 13 17 17 C 1.50702 * 126.55600 * 179.74154 * 16 15 14 18 18 C 1.53002 * 109.46790 * 270.00193 * 17 16 15 19 19 N 1.46901 * 109.47270 * 179.97438 * 18 17 16 20 20 N 1.28882 * 125.45510 * 239.99875 * 13 3 2 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.46622 * 29.99334 * 17 16 15 28 28 H 1.08997 * 109.47473 * 149.99941 * 17 16 15 29 29 H 1.09010 * 109.46971 * 299.99555 * 18 17 16 30 30 H 1.09001 * 109.47755 * 59.99467 * 18 17 16 31 31 H 1.00896 * 111.00366 * 179.97438 * 19 18 17 32 32 H 1.00904 * 110.99703 * 303.95553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 7 1.9921 1.7121 2.4327 15 7 1.4782 2.5210 3.2961 16 6 0.7858 3.4375 2.6196 17 6 0.0063 4.5866 3.2053 18 6 -1.4322 4.1415 3.4762 19 7 -2.1919 5.2614 4.0478 20 7 0.9124 3.1483 1.3477 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 0.4710 4.9020 4.1395 28 1 0.0027 5.4192 2.5019 29 1 -1.8970 3.8259 2.5420 30 1 -1.4287 3.3088 4.1796 31 1 -3.1462 4.9927 4.2354 32 1 -1.7447 5.6139 4.8808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:26 Heat of formation + Delta-G solvation = 104.941694 kcal Electronic energy + Delta-G solvation = -15567.067312 eV Core-core repulsion = 12986.112605 eV Total energy + Delta-G solvation = -2580.954707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.40191 -36.24015 -35.37937 -32.87036 -32.34951 -31.55109 -28.92731 -27.32071 -24.24501 -23.14497 -22.57642 -21.02177 -20.13036 -17.24052 -16.35997 -15.94693 -15.77660 -15.25161 -14.53712 -14.02986 -13.47434 -13.17849 -12.92924 -12.76326 -12.29299 -12.04904 -11.59870 -11.40761 -11.24681 -11.03264 -10.89993 -10.55786 -10.43377 -10.21158 -10.08277 -9.96004 -9.63769 -8.97504 -8.81604 -8.72941 -6.42522 -4.52990 2.28473 2.88871 3.12094 3.17779 3.20972 3.28850 4.17555 4.30862 4.86531 4.89122 4.99601 5.18998 5.42766 5.60138 5.85690 5.94450 6.04490 6.09105 6.13450 6.42090 6.46988 6.59345 6.65609 6.80544 6.96313 7.05492 7.29194 7.33369 7.40948 7.57395 7.76267 8.49792 9.14377 9.35208 10.63361 Molecular weight = 225.13amu Principal moments of inertia in cm(-1) A = 0.041501 B = 0.006886 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.527443 B = 4065.222201 C = 4423.700269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.281 3.719 4 H 0.080 0.920 5 C -0.537 4.537 6 H 0.069 0.931 7 C 0.074 3.926 8 N -0.884 5.884 9 Si 0.915 3.085 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.086 5.086 14 N -0.060 5.060 15 N -0.319 5.319 16 C 0.132 3.868 17 C -0.010 4.010 18 C 0.068 3.932 19 N -0.850 5.850 20 N -0.315 5.315 21 H 0.047 0.953 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.123 0.877 26 H 0.272 0.728 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.343 0.657 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 3.750 6.138 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.184 3.816 4 H 0.098 0.902 5 C -0.576 4.576 6 H 0.088 0.912 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.741 3.259 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.002 5.002 14 N -0.052 5.052 15 N -0.189 5.189 16 C -0.151 4.151 17 C -0.051 4.051 18 C -0.064 4.064 19 N -0.380 5.380 20 N -0.167 5.167 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.155 0.845 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.452 3.449 5.208 8.980 hybrid contribution 0.554 -0.270 0.610 0.867 sum -5.898 3.178 5.818 8.874 Atomic orbital electron populations 1.21850 0.98224 1.00392 1.00294 1.22028 0.92724 0.97129 1.05070 1.20045 0.97160 0.90188 0.74160 0.90190 1.21059 0.88479 1.40823 1.07223 0.91239 1.24839 0.99739 0.93879 0.94624 1.69812 1.35956 1.36894 1.09399 0.86265 0.83178 0.78729 0.77748 1.19632 1.20725 1.19877 1.51105 1.25287 1.13976 1.09800 1.78848 1.17471 1.19962 0.88884 1.75702 1.12844 1.04221 1.26146 1.25212 1.02452 1.00515 0.86907 1.19629 0.92228 0.92165 1.01083 1.21710 0.93111 0.91706 0.99891 1.58671 1.06256 1.36658 1.36371 1.74590 1.14759 1.05923 1.21407 0.93434 0.95126 0.92916 0.92524 0.85938 0.91791 0.89616 0.88773 0.90577 0.94979 0.84503 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.80 37.16 0.36 -2.56 16 2 C -0.13 -2.93 5.33 -26.73 -0.14 -3.07 16 3 C 0.28 6.86 2.61 -69.09 -0.18 6.68 16 4 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 5 C -0.54 -14.12 8.70 -34.44 -0.30 -14.42 16 6 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -22.73 11.29 55.43 0.63 -22.10 16 9 Si 0.91 20.20 29.54 -169.99 -5.02 15.17 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.09 -2.03 3.17 -5.94 -0.02 -2.05 16 14 N -0.06 -1.42 12.87 60.35 0.78 -0.64 16 15 N -0.32 -6.93 12.50 32.45 0.41 -6.53 16 16 C 0.13 2.59 7.62 -156.62 -1.19 1.40 16 17 C -0.01 -0.15 6.10 -27.88 -0.17 -0.32 16 18 C 0.07 0.85 6.77 -3.82 -0.03 0.82 16 19 N -0.85 -8.42 9.62 -10.36 -0.10 -8.52 16 20 N -0.32 -6.94 12.13 32.47 0.39 -6.55 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.60 7.75 -51.93 -0.40 0.20 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 25 H 0.12 2.93 5.95 -51.93 -0.31 2.62 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.34 2.76 9.08 -39.29 -0.36 2.41 16 32 H 0.34 2.81 8.99 -39.29 -0.35 2.45 16 LS Contribution 277.63 15.07 4.18 4.18 Total: -1.00 -27.70 277.63 -4.84 -32.54 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.34 Total: 4.16 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.74 Total: -9.67 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 2.08 Total: -46.38 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.70 -4.84 -32.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.486 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds