Wall clock time and date at job start Sun Mar 29 2020 21:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48496 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47176 * 300.00055 * 3 2 1 6 6 H 1.48499 * 109.47366 * 59.99931 * 3 2 1 7 7 C 1.38813 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99858 * 165.63688 * 7 2 1 9 9 N 1.36942 * 119.99660 * 345.63960 * 7 2 1 10 10 C 1.46952 * 120.65753 * 329.32819 * 9 7 2 11 11 C 1.53188 * 108.89124 * 233.53931 * 10 9 7 12 12 C 1.53041 * 109.31267 * 305.44656 * 11 10 9 13 13 C 1.53035 * 109.54155 * 61.35804 * 12 11 10 14 14 C 1.46920 * 120.62538 * 149.51286 * 9 7 2 15 15 H 1.09005 * 109.58666 * 246.31524 * 14 9 7 16 16 C 1.53000 * 109.59025 * 6.60035 * 14 9 7 17 17 H 1.09002 * 110.35142 * 59.02529 * 16 14 9 18 18 C 1.54954 * 110.30978 * 181.16785 * 16 14 9 19 19 C 1.55310 * 100.94064 * 155.36098 * 18 16 14 20 20 C 1.54386 * 102.24896 * 325.86747 * 19 18 16 21 21 O 1.43233 * 107.59194 * 21.35758 * 20 19 18 22 22 H 0.97006 * 119.99486 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47253 * 113.75023 * 10 9 7 24 24 H 1.09004 * 109.71166 * 353.46680 * 10 9 7 25 25 H 1.08995 * 109.50381 * 185.48916 * 11 10 9 26 26 H 1.09011 * 109.52432 * 65.40790 * 11 10 9 27 27 H 1.09006 * 109.45616 * 301.33873 * 12 11 10 28 28 H 1.09004 * 109.45110 * 181.38003 * 12 11 10 29 29 H 1.08997 * 109.50069 * 178.68490 * 13 12 11 30 30 H 1.09000 * 109.49376 * 58.59227 * 13 12 11 31 31 H 1.09004 * 111.12132 * 37.44415 * 18 16 14 32 32 H 1.09000 * 111.15915 * 273.29526 * 18 16 14 33 33 H 1.08997 * 110.84371 * 207.67715 * 19 18 16 34 34 H 1.08997 * 111.01749 * 84.13549 * 19 18 16 35 35 H 1.09001 * 109.82925 * 261.84288 * 20 19 18 36 36 H 1.09000 * 109.82734 * 140.87501 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0649 -1.2167 -0.2326 9 7 1.3575 -2.3697 0.2931 10 6 0.2120 -2.3767 1.2136 11 6 0.4684 -3.4083 2.3166 12 6 0.7708 -4.7663 1.6791 13 6 2.0305 -4.6579 0.8168 14 6 1.7917 -3.6403 -0.3032 15 1 1.0182 -4.0117 -0.9755 16 6 3.0893 -3.4235 -1.0843 17 1 3.8687 -3.0402 -0.4257 18 6 3.5470 -4.7482 -1.7452 19 6 4.3991 -4.2092 -2.9265 20 6 3.6473 -2.9164 -3.3096 21 8 2.8685 -2.5165 -2.1760 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6921 -2.6437 0.6665 24 1 0.0916 -1.3887 1.6582 25 1 -0.4153 -3.4920 2.9491 26 1 1.3193 -3.0923 2.9203 27 1 -0.0705 -5.0705 1.0563 28 1 0.9295 -5.5077 2.4623 29 1 2.2585 -5.6309 0.3818 30 1 2.8667 -4.3299 1.4342 31 1 2.6937 -5.3224 -2.1062 32 1 4.1545 -5.3401 -1.0605 33 1 4.4030 -4.9161 -3.7562 34 1 5.4163 -3.9857 -2.6048 35 1 2.9922 -3.1076 -4.1595 36 1 4.3627 -2.1335 -3.5615 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560224347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:28 Heat of formation + Delta-G solvation = -32.791939 kcal Electronic energy + Delta-G solvation = -16844.111870 eV Core-core repulsion = 14328.432177 eV Total energy + Delta-G solvation = -2515.679693 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.10129 -36.94800 -32.97225 -31.71009 -31.20643 -29.70869 -27.32341 -25.00145 -22.75917 -22.09856 -20.95055 -19.98807 -19.04617 -16.54985 -16.11276 -15.05088 -14.83548 -14.25713 -13.88846 -13.51897 -13.26318 -12.82757 -12.59121 -12.49998 -12.08910 -11.74268 -11.19664 -10.95278 -10.81734 -10.70925 -10.63467 -10.49886 -10.27606 -10.11900 -10.00500 -9.82119 -9.35792 -9.27384 -8.62450 -8.26687 -6.42611 -5.57792 -3.00681 3.49033 3.56033 3.58476 4.45029 4.67718 4.89320 5.08905 5.27876 5.49629 5.55921 5.64112 5.71435 5.74472 5.78877 5.90144 5.97240 6.05694 6.16721 6.18607 6.30110 6.33522 6.42891 6.47561 6.52955 6.66710 6.81723 6.83237 6.96034 7.16360 7.51421 7.79147 7.90970 8.04997 8.65742 9.42063 10.03279 10.60513 11.52154 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.014130 C = 0.008950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.964720 B = 1981.071050 C = 3127.593555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.222 4.222 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.175 3.825 15 H 0.028 0.972 16 C 0.097 3.903 17 H 0.066 0.934 18 C -0.152 4.152 19 C -0.155 4.155 20 C 0.042 3.958 21 O -0.337 6.337 22 H 0.249 0.751 23 H 0.015 0.985 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -9.836 -1.270 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.352 4.352 8 H 0.088 0.912 9 N -0.307 5.307 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.068 3.932 15 H 0.045 0.955 16 C 0.039 3.961 17 H 0.083 0.917 18 C -0.190 4.190 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.256 6.256 22 H 0.059 0.941 23 H 0.034 0.966 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.628 -9.493 -1.279 11.110 hybrid contribution 0.539 0.692 -0.161 0.892 sum 6.168 -8.801 -1.439 10.843 Atomic orbital electron populations 1.70035 1.05171 1.24791 1.55539 1.25039 0.95197 0.98123 1.01377 0.86265 0.79347 0.84528 0.76917 1.20451 1.21987 1.22028 1.19148 0.91850 0.83758 1.40412 0.91242 1.44063 1.35680 1.02005 1.48966 1.20745 0.88545 0.97522 0.88438 1.22202 0.99883 0.96563 0.99668 1.21368 0.97634 0.97400 0.98143 1.21999 0.98072 0.98222 0.98472 1.20624 0.92835 0.88396 0.91360 0.95453 1.22905 0.97620 0.86517 0.89053 0.91652 1.23344 0.99719 0.98738 0.97231 1.23097 0.99628 0.97799 0.98734 1.23079 0.94221 0.94944 0.91293 1.88881 1.66043 1.50146 1.20516 0.94136 0.96648 0.89668 0.93539 0.92850 0.92925 0.93821 0.93225 0.92332 0.90715 0.90593 0.90942 0.91126 0.92396 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 11.22 55.49 0.62 -26.92 16 2 C 0.00 -0.01 4.96 -17.43 -0.09 -0.09 16 3 Si 0.90 22.86 29.58 -169.99 -5.03 17.83 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.22 -6.24 7.80 -15.06 -0.12 -6.36 16 8 H 0.07 1.96 5.94 -52.49 -0.31 1.65 16 9 N -0.58 -15.04 2.99 -164.76 -0.49 -15.53 16 10 C 0.17 4.29 5.26 -3.70 -0.02 4.27 16 11 C -0.14 -2.85 6.08 -26.61 -0.16 -3.01 16 12 C -0.11 -1.88 5.88 -26.69 -0.16 -2.04 16 13 C -0.13 -2.27 5.06 -26.61 -0.13 -2.41 16 14 C 0.18 3.76 2.72 -67.60 -0.18 3.58 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C 0.10 1.91 2.15 -25.70 -0.06 1.85 16 17 H 0.07 1.35 7.40 -51.93 -0.38 0.97 16 18 C -0.15 -2.25 5.58 -24.47 -0.14 -2.38 16 19 C -0.15 -2.07 7.02 -24.78 -0.17 -2.25 16 20 C 0.04 0.70 7.79 37.88 0.30 1.00 16 21 O -0.34 -7.53 9.17 -35.23 -0.32 -7.85 16 22 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 2.35 6.18 -51.93 -0.32 2.03 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.75 7.53 -51.93 -0.39 0.35 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 275.73 15.07 4.16 4.16 Total: -1.00 -31.27 275.73 -8.03 -39.31 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.03 Total: -3.14 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.93 Total: -7.85 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.13 Total: -42.45 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.32 Total: -7.85 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.27 -8.03 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560224347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.513 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds